AMCG00017673


Basic Information

Item Value
gene id AMCG00017673
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17676609 ~ 17692389 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017673
ATGATCATGATGGAGGTCAATCTAACAACACACAATAACAGCTGGAATCCCTGTGACATAAACTTGTATTCTGACAGTTACATCCTATGCGTGGTGTACGGCCTTGTCTTCTGTATCGGATTGCCCTCCAACTGCCTGGCTCTGTACGGCCTGTATAGCCTGGTCAAAGCAGAGAACATCCTCCCAGTGTTCGTCATCAACCTGCTCCTGTCCGACCTCATCCAAATCTTCATCATACCGCTGTGGATCGACTACTACAGGAACGGACACAAATGGCGCTTCGGCGTCATTTCCTGTCGCGTGTTTGGCTGCATTTTCTACATCTGCCTGTTTGTCAGCATCTTTTTCATGTGCTGCATTGCTATGGAGAGGTACCTGGCCATAGCTCACCCCCTGAAGTTTCGAAGCTATGAGAAGCTGAGGAATGCGACCCTCATCTGTGTGACTCTCTGGGTGGTCGTCTCCATCGGCACTTCTGCAGCGTTCTGCATCGGCTTGGCAGATGCACCCAGAAGCCTGTGCATGGAGACGTACTCTATTGGGAAGGATTATGCGGTATTCCAGCTGGTGGCTATGACCATTACCTTTCTCTTCCCCTTTGTCCTCCTCGTGTATATTTACTACAACACTCGGAAGAAAATAACCAGCATTATATCAGTGcatgaaaaggagaaaagaaagatcATGAACCTCTTATCGTTGATTATTGTGATCTTTGTGGTAGTCTTTGGGCCCTATCACATCATATGTTACGTCATTTCCATTGCAGTCCTCATCCTCGATGACAGATGTAATTTCCTGTCCCAGATCTTCATCTATGAGCAGGTGACCATGGGCTTGCTCAGCCTGAACTGTTTGCTGGATCCTGTGATGTACATTTTCCTAAGGAAAGACTTCAGAAAGACAGTGGTCAGGATCTTTCCGTTCCTGAAAAGGGCACGTTGCTGGAAAAGCCTGACAGGCAGTCAGGTGGAGAGCACAAGCCGTGAAGCAAGTATGAACAACAATAGCAACCTCATCTTGTGTGACAACATAGACTTCTCCTCCGACCAGCTATTCCTGTCTGTGCTGTACATCGTTGTCTTCTGCATCGGGCTGCCCTCCAACTGCATGGCTCTGTATGGCCTGTACCGCCTGGTCAAGGGTGAAGACATCCTCCCAGTGTTCGCCATCAACCTGCTCCTGTCTGACCTCCTGCAGATCAGCACCTTACCGCTGTGGATCGACTATTACATAAATGGACACAAGTGGCGTTTCGGGGAGGCTTCTTGCAGTATCATCGGCTGCACTTTCTTCATCAGCCTGTTCGTCAGCATCTTTTTCATGTGCTGCATTTCTCTGGAGCGGTACCTGGCCGTCACCCGTCCTCTCTGGTTTCGAAGGCATAGCAAGATCAGAAACTCTGCGGTGTTCTGCCTGGCCCTGTGGGTGTTCGTCACTGTGTGCACCTCTGTAGCTTTCAGCCTTGGCTTTGAAAGCTCGCCAAATGAACTGTGCATGGAGAAATACCCCGCTGAAAAAAGTTTTGCAGTCTTCCAGCTCTTTGCCATGACAATCAGTTTCATCCTGCCCttgattttctttctatttgCCTACTGTAGCATTCGGAATAACATCAGCAGAGTAGTCTCCATTCCAAAtgaggagaaggaaaaaatcCTTCTGTTACTGTTTCTCATCTTGGTGGTATTTGTGGTGGTGTTTGGCCCCTTCCATATTATTTGTTACGTAGCATATATTGGGGTTCTCTTTCTTGAGGACAGCTGCGATTATGAAGCAAGTATCTTCATCTATTTCCAAGTGGGTATGGGACTACTCAGTCTGAACAGTGTCCTTgatccatttatatatatacttatcaGGAAGGATCTGAGAAAAGAGTTTCTGACATGTTTCCCCTGCATTCAAATGTGTAAGGGCTTGAGGGCAGACAGAACAAATGATGGGCAGTGTCCATCTCTCCAAACATTCTCAAACAATACAAGGCGAATCCACAGAGAGGCCGAGCAAGCAGCAGGCATCCCTGGTGAAGATGTCACAGATATCCGCCCACTGGTTGGAATCCAGCAAGTGAACTTCCTCTGCCACATCCAGCATGCCTTGCCTGAAGAAGTGCTCCACCATGACTTCACTGAGGATCCTCTGGCTCTCGGCCTGCCAGCAGCCCTCGATGCCCACGCTGCTGATATCCGAGTCGAAATTCTGACACAAACGGGAAGGAAGGAGTCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017673 True 2232 mRNA 0.48 4 17676609 17692389

Neighbor

gene id symbol gene type direction distance location
AMCG00017667 mfsd8 coding upstream 90784 17578055 ~ 17585825 (+)
AMCG00017666 pgrmc2 coding upstream 165318 17509251 ~ 17511291 (+)
AMCG00017662 NA coding upstream 248274 17395731 ~ 17428335 (+)
AMCG00017656 NA coding upstream 1841559 15828929 ~ 15835050 (+)
AMCG00017658 NA coding upstream 1882162 15609983 ~ 15794447 (+)
AMCG00017679 reep1,LOC107719410,LOC107731967,LOC107703485,LOC107561684 coding downstream 62136 17754525 ~ 17782183 (+)
AMCG00017681 NA coding downstream 99925 17792314 ~ 17797219 (+)
AMCG00017678 NA coding downstream 118300 17810689 ~ 17824102 (+)
AMCG00017683 LOC107733402,LOC107667450 coding downstream 141819 17834208 ~ 17863721 (+)
AMCG00017682 NA coding downstream 212021 17904410 ~ 17916754 (+)
G92267 NA non-coding upstream 108446 17566643 ~ 17568163 (+)
G92230 NA non-coding upstream 230616 17445625 ~ 17445993 (+)
G92229 jade1,LOC107712027 non-coding upstream 235645 17440658 ~ 17440964 (+)
G92228 NA non-coding upstream 236400 17439660 ~ 17440209 (+)
G92197 NA non-coding upstream 434545 17241816 ~ 17242064 (+)
G92316 NA non-coding downstream 31854 17724243 ~ 17724515 (+)
G92317 NA non-coding downstream 33031 17725420 ~ 17726983 (+)
G92318 NA non-coding downstream 36480 17728869 ~ 17729075 (+)
G92320 NA non-coding downstream 38491 17730880 ~ 17731252 (+)
G92322 NA non-coding downstream 41631 17734020 ~ 17734586 (+)
AMCG00017668 NA other upstream 56576 17601535 ~ 17620033 (+)
G92130 LOC101154678 other upstream 1541293 16135025 ~ 16135316 (+)
G92123 LOC101154678 other upstream 1808975 15867031 ~ 15867634 (+)
AMCG00017650 NA other upstream 2560578 15109422 ~ 15116031 (+)
AMCG00017652 NA other upstream 2569774 15093191 ~ 15106835 (+)
AMCG00017674 rnf103,LOC107722440 other downstream 6534 17698923 ~ 17723950 (+)
G92538 NA other downstream 1380849 19073238 ~ 19073662 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other downstream 1703639 19396028 ~ 19433103 (+)
AMCG00017712 NA other downstream 1751783 19444172 ~ 19528293 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other downstream 2300696 19993085 ~ 20003129 (+)

Expression


Co-expression Network