AMCG00017675


Basic Information

Item Value
gene id AMCG00017675
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17781648 ~ 17789749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017675
ACTGTACTTTGGAGGTCAGCGTGGGACGTAAAGATGGCGGTCGCCTTGAGAAGTGTCTCAGGGTTGCTGCGCCCCCTGGTCCCGTTAGCCCGGGCTTCGTGCTGCGAGGCCGGGTGGGCCACACAGCTGTCCGCCAGGTTCTCCACTCTCAGACTGGGCCACAGCGTCCAGAGGCCGGCGCTGTCCTCTGTGTGGGTCTCCGCGCCCAGACACGGCTGCCTGCCCGCTTCACAAAGTATTCTCCAGAGCATCCCTCCTCTGCTGCCTGGTCTCGCCCTCCAACCAACTAGGAATCTCACCTACTGCAGTCTGAAGAAGGGGAAGAGGAAGTCCGTAAAATCTGTGGTCAAACGATTCCTGCGACTGCACTGTGGACTGTGGCTGAGAAGAAAGTCTGGCTATAAGAAGAAGCTTTGGAAGAAGAAGCCAGCCAGAAAGCGGCGGCTGAGACAGCATGTCTTCTGTAACCGCACGCAGTCCAAACTCCTGGACAAAATGACCACCTCTTTCTGGAAGAGAAGAAACTGGTTCGCAAACGACCCTTACCAAAAGTATCACGATCGCACCAACCTCAAAGTGTAGGAGGTGTTGACTGCATGATGAAAAAACTGTCCGTCAGCAAGTTCAaccaaggtttttttttattagaactTTTGAAGAGCCTACAGAGACCAGTccttatattttttctttccattgctCAGTCTATAAAATATTGACCCATCATTTCAAATCATTCTTCTCATTGTTCTGTGCTTGGACTTAGACCACCTTACATTGTTCATTTGCAGAAGGATGGCTTAGTGGTCAGTTGTAATACATATGTATGACATTTGACTCTTCTGAGTGCAATGCTGAATTCAGATGTACATGGGTGTTTTATGGCATACTAGGTAGGCTAAttcgatttaaaaaaaaacatctctgtaCAAATAAACTTCCATAAGAAAACTACAACTACAGAGGTCAGTATTTGAAATGGACGTGCGCAAAATATTCAGTAAATTCTATAAGCTTTGTATGGCAAGCTACAAAGATTAAAGTGAATCTTGGAGTAAAGAGATTCTAGTTTCTGATGTGAAGTTATTTATTTCGCAACCCTGGAGAGAATTGGAAGCACTTTTCATCAGAGTTATAGGCCTATTACCTTCAAAGGGTGACTGTCAAAGATGTGTAAAAGTCAGTCTGATTTGACACCATTGTTAATGCTGGTGAACCTACACTTGTTTTCTCATTCCTAAATAAAGTGTTCAGTTcaatgattgattttatttcctcaGTTCCAGTGTTTCATTAACCCCTTTGAGAGAGACTGGATTATTGTTACTAATATTTGTGattataattaagaaaaatattattagtCTGTCTCAGGGGGCATCAATGCCTTTTTTGTTATTAGTTTAATCTCTGTGAACTGTAGA
>TU115166
TCAGCGTGGGACGTAAAGATGGCGGTCGCCTTGAGAAGTGTCTCAGGGTTGCTGCGCCCCCTGGTCCCGTTAGCCCGGGCTTCGTGCTGCGAGGCCGGGTGGGCCACACAGCTGTCCGCCAGGTTCTCCACTCTCAGACTGGGCCACAGCGTCCAGAGGCCGGCGCTGTCCTCTGTGTGGGTCTCCGCGCCCAGACACGGCTGCCTGCCCGCTTCACAAAGTATTCTCCAGAGCATCCCTCCTCTGCTGCCTGGTCTCGCCCTCCAACCAACTAGGCTTCACAAGAGTGCTACTCAACGTACGtctcaaacatatatatttactgaaaaccaAAACCTGACCGGTTGAGTGGTCATTTCTCTGATATTGTAAGCCCTGGTGaggctttttaaattaagcacaAGCCTGAGCAATAACAAGTCAGATTGTTTTCTCTTCTCCATACAAACATGCTGTGTGCTTAATGCTTCTGGTTGTCTTCACAGCTGTGGGCATTGGGTTCAGGCCCAATAACCAGGTATCTGAGCTAGTGTTGTACTGTGCATTACTATGGCTTTGACAGACAGCCTGCTATGGATGTTacatatttgcatgtttgtCAGAGGATCTTATTATCTACAGGAGTTACCTGGATAGTAGCAATTACTTGTACTCATGTTCTCATCTTTTTCCCATTCTGGAGCTCAATTCCGACAGATTTTTAAACATGGGCAGGTCTGTCTCTACAAGTACATTTCAAAACGTGTTAAGTGGTTGCGGATCAGTTTGGCATCCTTTCCTCTTAAAGGTGCACAGTGGCATATATTGCAGATGTTTTGCTCAGGGGGCGGGGggaacattaatataaaaaaagagacagATGTATGCATGTTAACAAACCATTCAGAATCGGgttcaaaaaagtaaaaaagtgtGCTGACTAAACTGGATATGAAACCgagagagaaagcagagatGTAAGAAATTGTAGATATAGGTACAATTTTTCAGTGTCTGAAGACATCTGAGCAGTGCAGTAGTTCAGAGTGCAGGTGGAAGGCCGTGCTGAGTCCTGGCCCGGTCAACAGTGTTCAACACACACGCGCTGGCACCAAGAGACGGGCACTGGCTTTATGGAGCTAAGCCAGCTCAGCtcaataaaaccaaacacaacGTCTGCAGTAacaatttgtaaatattaacaCACAAAGCAAGTAAAAAGGctcatacacagacacacagacattgcTCTGTAGTGAAAAGAGTAGTTGTATAGCCAGGGTTCTTCCTCCTTCCTTGTGATGATGCATACAGTAGCCTCAtagatggggaaaaaagtaaattaaaacagtcATTAGATATAAATACCACTTTTCTCCTCTACATTATCATAATTCTTGGCCATCTCCATCTACTTAAACTGCTTACAATCCATCTAGTCACGTAttcttaaaaccttaaaaaaaacagtgcagctctgcTGTCAACATGAAGGTCACATTTACCGTTCAGTTCCAATCTGACCTTGAGTCTTTGAGTCTGATCTACAGCTttccataaaatacaatatccATGTTCAAGTATATTACTGCTCTCGTGTTGTCAGGGTCTTGACACTCTAGCATCTTGATATATAGTTATGACATGGATTCCTCATTGTATGAGTGTGCTACGTATGAGCCAAAATGTTTAGTTATTCCCCCTACATGATAGCAATCCTTATATTTTGCAGAAGGAGGTCTTTGTACTGTTGCTATTAGACATTTTCATTTAGTCCTTCTATAATACTATAACTGCCAAGAATTCCTCAGGATTGGTGATATGCTTGTCTCTgcaaaacaactaaattacaTGAAACATCTATGCATGTTAAATGTGGGTTATTATTTAATCGATGTATGTGTCCTTCTGGTATATTGTCGACTTTCAGAATGAAACCCTGCAAACAGCTCTTTGTTGTAAAAGGAtgtttgcacatttaaaaacacaagctgACATGCAATTACTGAATCAAGACAGTTATCTTTGGGGAACCAcagaaattaacattaacactCTTTTGGGGTTCTTGGAGCTCAGAATGCTCTAATAAAAAGgtgaattattttgtaaaggttaataaaaagtacaattacATAACATGTTGTTGTCTAAAATGCATGATTGTGTTGCAAGGCTGCTTCATCACACTACATCACTAAGCGACAATACACCATCATGTCTAAATGTAATTCAGTGCTCTACATATCCCTGTGTTAGTTTCTCCTGGGAGGACCAAAACCCAATATCTCATACTATAGTTATACACACTAAAACCTGTAGTACAGATTCAGCTGTAACACTTATGCACACTACTGTATATTGTTACTGTActttcatattgtatttatctGTTACATCTACATAAAAGCATTCCTATACCTaatagaattatattattatgcgTAGTAGCTTATTTGGACAGTGCTACAGACCAATCCTCCATTGTAAAGGTGTGAAAGGCAAAACAACTCACTTTCTCCAGAAAAGCTATAGAATCCCCATAATTATTACACACCACAACTATCTTCAGACAAATCCAAATGCTAAAATCTCAAAACAGCAGCTCTGCCGCAGCCACAACTTGTGATATGTATCTGTAAAGTActactttaaatatttgaaaattgaGTCTGAGGAActgtaaatgcaaatgcacCTTATATTCTTTCCTACCTTAAATATTCATTCTGTTGTTACATACagttaagaaaaacacaattctcTAGCAGCTACAGCCCTGTGTCCTACCACTCTCTCCTGCCCCTGCTGGAGGTGTAACTACAGGCAGCACAACTGACTATAGCGACCTTGACAAGCCCCGCCAAGCCTAACGTCTGAATCATCTCCCCCTTGCTGTTGCAAATAGAACAACACTGAAAGACTGAGAGGCCTGTCACAATGCTGCTGTGCTTGTGCGCTATTTTCGAGTGAACTTTGGCTTCCATGTAACAGTGACAAACACAGAGTGTGGCATGCATGGTTTTGCAGTACACCATTTTTCCTAAAAGAGGAGCGATGGCACCTTAAAAGCGAACAgatgcacaaacaaacacacaagataATAAAAATACCCCATAACAAACATGAATGCACAGATGCCCCGTGAAGAGATGATGTCATCTCCACTGCAAGCTGCATATACGGCATCCCAGTTGCTTGCTGCTGATTGATTTTACTCCTTCTCCAGAGAAgctgctgctttttatttttttacatgtgtttttgttttgtgttccttTCTTTCCCATCTGTTCTCTCAGGTTAAGGCAGCTAAGCGATCTGGGTGTGTTTTGATTGGCAGCGTCCCGTGGCCTGGCGCAGTCACATGGTTTCACTGTTTGATGACGAGGTACTCTTTGATCTGGGGCGAGGCCTCAGGACTCTAGGAGGaggctgggggagagagagagtgagagagagagaaggagggagggagagagagagggaggaatcGGGGGAGCCTGTTTTAGCTTCAAGAGATCAAGTACTGCACCAGAAAACCATTTCAAAGATATCAAAGACAAAGTTGTGAAGTGTCCCCAAAAGAGCAGCAGTAGAAGGATTAATAATAAGAAGGTTTTAGTTCTGTCACAAGGTCTACCCTGCCCTGCCCTAATTTGGGGGGGCAATTGAATTGATAGTAttgactttagtttttttatattgtagaaaatgttaattgtattcAGCAATGTAGTGAAATACAACTATTTTGGGCAGTATAAAGTTGTTCTGTATTGCAGAGAAATAATATAATagaagtttcctcagacagCTCAAGAAAACAGTCATCAAAAGCATGCTTGTACGTCCACACATCTGTCAGTAGAGGGAAGCAAAGCTCTTCTCTGTGCATTACTTGAAATCAGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017675 False 1424 mRNA 0.44 4 17786934 17789749
TU115166 True 3891 lncRNA 0.42 4 17781648 17789734

Neighbor

gene id symbol gene type direction distance location
AMCG00017676 NA coding downstream 47069 17721101 ~ 17734579 (-)
AMCG00017677 NA coding downstream 84208 17683162 ~ 17697440 (-)
AMCG00017669 NA coding downstream 116863 17620902 ~ 17664785 (-)
AMCG00017672 NA coding downstream 181955 17588881 ~ 17599693 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding downstream 205876 17558444 ~ 17575772 (-)
AMCG00017680 NA coding upstream 35309 17825058 ~ 17833817 (-)
AMCG00017684 NA coding upstream 138684 17928433 ~ 17942165 (-)
AMCG00017688 NA coding upstream 384402 18174151 ~ 18177011 (-)
AMCG00017686 NA coding upstream 391816 18181565 ~ 18189353 (-)
AMCG00017687 zgc:136929,LOC107742495,LOC107665264 coding upstream 442659 18232408 ~ 18268748 (-)
G92313 NA non-coding downstream 67466 17713903 ~ 17714182 (-)
G92200 NA non-coding downstream 529018 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 620003 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 784144 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 854838 16926494 ~ 16926810 (-)
G92375 NA non-coding upstream 64178 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 100593 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 315240 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 598056 18387805 ~ 18452812 (-)
G92434 NA non-coding upstream 669820 18459569 ~ 18459816 (-)
AMCG00017665 NA other downstream 294151 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 386599 17387484 ~ 17395049 (-)
G92129 NA other downstream 1750743 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1914001 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 3016816 14760068 ~ 14764832 (-)
G92436 NA other upstream 673035 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1623238 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2512251 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5528344 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 6474930 24264679 ~ 24270595 (-)

Expression


Co-expression Network