AMCG00017680


Basic Information

Item Value
gene id AMCG00017680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17825058 ~ 17833817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017680
ATAAAAATGGCGGCCCCCTGCGCACAAGTAGGGGTGCGTCTTCACTGCAGTGGTAgggtaattttaaataaattagagaCATGGCGGCAATTAAGAAGTCTTTTGAGTCGACAAACCGCAACCGAAAATGCAGGGATAAACTGGCAGTTCTACAAGCACTCGCATCCACCGTGAACCGGGATCCCACAGCTGCACATTACATGTTTCAAGATGACCCCTATCTTACTCCAAGAACCTCTCCTGAATTTAAATTATATTCCCTCTCCCAGGAGTCTGGTAGGAATGCAGCCAAATACATTGTTAATACCTACCCAAGGTTCTTCCAGAAAGACTTTGCAGAACCACATATACCTTGTCTGATGCCCACCTCTGTGGAGCCTCAGATTGGTGAGCTGAGTGAAGCTGCCCTCCGAGAGCGCGTGCAGCTGCGCCGAGTGAAGGCGGCTGTGGATGTCTATGACCAACTGCTGCAGGCAGGAACTGCAGTGTCTCTGGAGACCACCAACAGCCTTCTGGACTTGATCTGCTTATATGGAGACAAAGACCCTGTTCGAGAAGATGACCCCGAAGCCATGGAAGCTGGAGATGTGGAAGAAACCCAGGATGACACTCGGAGGAGGAAAGGGAGACTGCGCAAAGCATCTGATGTGCTTGGGGTTGTTTGGAGAGAGAACAACAATGCAGAAAGGATCTTTAATTTGATGCCAGAGAGAAACGAACAATCTTACTGTGCCTTGATAAAGGGGATGGTGAAGTATGGTGCTTATACAAAGGCATTCAATGTGTATACGGATTTATTGAATAACCGAATGACTGctGATGTCTGCACATTCAATGCCCTGATTGCTGCAGCACCTGAGCTCAAGGAAAAATACCAAGATAAATGGGCACTTATTACTGACTTGTTGAAGCACATGAGTGAGCAGAAGGTGCAGCCCAACCTGCTGACATTCAATGCTGTGCTGAAGGCCCTGCGCAAGTGTGGGCCACTGGGCAGGGTGCAGTCCCTCCTCACGCTCGGGGAGATTAAGGCACTGGCCATTGAACCAAGCTTGGCTACATATGACCACCTCATTGGCATTTTCTACAAAGCTGCCTCCACTCGAGGGCCCACTGAAATTCTTCATGAAGTGATGGATGAAGTGGAGGGGAAGAGTTTTGTTGCTCAAGACCCTGATGATGTGTATTTCTTTTCTGATGCCATGAGAATTTGTCTGGAATTGAAAGATCTGGAGCTGGCCTACAGACTGAACAGATTTCTTGGAGTTGGTGATAATTGGCAGCTGCTGGGTGACTTTTACCAGCAAAATTACTATTATGGACGATTCTTCACCTTGCTGTGTATCATGGAAAACCTTGATGTGGTTATGAAGTGGTACAGAGATTTAATCCCTTctCTTTACTACCCCAATTCTCAAGGAATGATGGATTTGCTGCAAGCGCTGGACACAGATAATCGTTTGGACCTCATTCCAGAGATCTGGAAAGATATCAAGAAGCTGGGTCATGCCAACAAGGCTGAGCTGGTGGAGGAGGTGTTGGCAATGATGGCACGAGAGCAGCACAGCCCCGAGGTTCAGGAATCCTTTGCGGACTGTGCACTAGCTGTGAGGGCCGCGTTTGCACAGGGAGACGGTGGTCGATTCAAACTGGAGTGGACGGCCAGTTCTCTGGGCAACATTGCCACCCTGCTGCTGAGAGCTGGCAGGACTGGGCCAGCCTGggaaatgCTCCAGCTCTTTAAGGCAAACAATCGTGTCCCAGGgGTGGACCTGGTGACTGCGTATTTGAACTGTGCTAAAGTGAAAAACAACTCGGCTCAAGCTGTGGAGCTGGTCAGGCTGTCGTCTGGCTACAGTTTACCCATCACTGCAAAGCTGGCCTGCAGAGTGAAAGAGGAGTTTGAGCTGACAAATGAACAAAAGCAATCCTTGGCAGAATTTGAGGCCTTGACTAGTGATAGTGatagtgacagtgacagtgagagtGACAAGGAGTGAAATCGGCCATGAATAACTGCAGCGACGAGCAGCTTCCACTGTCCACTATGATCTGTGACTGAAGTCTGCCCCAGTGATGGATGAAACCAGCTCCTGAAGAACACAAACATTTCTTCACAGTTAATGTTACACTGGAAAGTAATGCAAGGATTTTGGTGAATAATTCACCTAATAAACTGATCTTATCTACTGTGTGTTGACCTTGCCTGTTGTCTGCTGCCAAGGTTAAACCCCCTTGTGTTGGAGGTTATTCAGTGTTCCTGCACATCCTAAAGTCTTGCATTGTTTTGAATTCTG

Function

GO: NA

KEGG:

id description
K17659 PTCD3; pentatricopeptide repeat domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017680 True 2297 mRNA 0.48 23 17825058 17833817

Neighbor

gene id symbol gene type direction distance location
AMCG00017676 NA coding downstream 90479 17721101 ~ 17734579 (-)
AMCG00017677 NA coding downstream 127618 17683162 ~ 17697440 (-)
AMCG00017669 NA coding downstream 160273 17620902 ~ 17664785 (-)
AMCG00017672 NA coding downstream 225365 17588881 ~ 17599693 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding downstream 249286 17558444 ~ 17575772 (-)
AMCG00017684 NA coding upstream 94616 17928433 ~ 17942165 (-)
AMCG00017688 NA coding upstream 340334 18174151 ~ 18177011 (-)
AMCG00017686 NA coding upstream 347748 18181565 ~ 18189353 (-)
AMCG00017687 zgc:136929,LOC107742495,LOC107665264 coding upstream 398591 18232408 ~ 18268748 (-)
AMCG00017694 NA coding upstream 664312 18498129 ~ 18501874 (-)
G92313 NA non-coding downstream 110876 17713903 ~ 17714182 (-)
G92200 NA non-coding downstream 572428 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 663413 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 827554 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 898248 16926494 ~ 16926810 (-)
G92375 NA non-coding upstream 20110 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 56525 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 271172 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 553988 18387805 ~ 18452812 (-)
G92434 NA non-coding upstream 625752 18459569 ~ 18459816 (-)
AMCG00017675 NA other downstream 35309 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 337561 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 430009 17387484 ~ 17395049 (-)
G92129 NA other downstream 1794153 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1957411 15866947 ~ 15867647 (-)
G92436 NA other upstream 628967 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1579170 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2468183 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5484276 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 6430862 24264679 ~ 24270595 (-)

Expression


Co-expression Network