AMCG00017686


Basic Information

Item Value
gene id AMCG00017686
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18181565 ~ 18189353 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017686
ATGGAAAAGCTGATGTTGCTTTGTAAATACAGTGCAGAGTGCTGGCTGGCCATACTTGCCCTTCTTTGCTGTGTCTGTAGTCTGCCTCTAGATGTAGACCCTGTCTGCACAGTAGAAGGCACTGCCAAGTACCGCCTAGTCTTCACCGGCAAATGGAGCCAGACTGCCTTCCCCAAGCAGTATCCCCTCTACAGACCCCCGGCACAGTGGTCACCAGTCATAGctgtgaCTCATAGCACTGACTACCACATATGGCGGAAGACCGAATATGCCAGCAATGGAGTCCGTGAGTTTTCAGAGAAAGGAGAAGCCTGGATACTGATGAAGGAAGTGGAGGCAGCTGGAGAGAAGATTCAGAGTGTCTATGGGGTTTTCTCTGCCCCAGCCATCATTGGTGGGACGGGCCAGACTACCTCTGAGTTTGAGGTCTTCTCAAGGCACTCCTTTCTGTCCTTCATTGTGCGGATAGTGCCCAGTCCAGACTGGTTTGTTGGTGTGGACAGCCTGAACCTTTGTGAAGGAGACCACTGGAAAGAAAGTCTGTCCCTGGATCTACACCCACATGATGCTGGCACAGACAGTGGCTTCACCTTCTCCTCTCCAAACTTTGAAACAATTCCACAGGAAAAAGTCACAGAGATCACATCATCGTTTCCCAGCCACCCAGCCAACTCTTTCTACTACCCCAGACTGAAGCACCTACCTCCCATTGCACGAGTCACCATCACAAAGATAAAGGGAAACCACATTGACAGCCTGCCTCCGCCCTATGCCCAGTTCAACCTAGTCCCTATTGGCAATGAAATAGAGGACACCATCGCAAATACTCCGCTGGACTGTGAGGTGTCCTCGTGGTCTCTCTGGGGATTGTGCAAAGGCAAGTGTGGGGAGCCGGGCATCAAACACAGAACGCGCTATATCCGTATGAAGCCGGCCAACAATGGAACTCCCTGTCCAGACCTGGAGGAAGACAAGGACTGTGACCCCGACAACTGTGTGTGA

Function

GO:      GO:0005578

KEGG:

id description
K24428 SPON2; spondin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017686 True 1002 mRNA 0.52 5 18181565 18189353

Neighbor

gene id symbol gene type direction distance location
AMCG00017688 NA coding downstream 4554 18174151 ~ 18177011 (-)
AMCG00017684 NA coding downstream 239400 17928433 ~ 17942165 (-)
AMCG00017680 NA coding downstream 347748 17825058 ~ 17833817 (-)
AMCG00017676 NA coding downstream 446986 17721101 ~ 17734579 (-)
AMCG00017677 NA coding downstream 484125 17683162 ~ 17697440 (-)
AMCG00017687 zgc:136929,LOC107742495,LOC107665264 coding upstream 43055 18232408 ~ 18268748 (-)
AMCG00017694 NA coding upstream 308776 18498129 ~ 18501874 (-)
AMCG00017695 NA coding upstream 538346 18727699 ~ 18737258 (-)
AMCG00017699 NA coding upstream 593377 18782730 ~ 18790340 (-)
AMCG00017698 NA coding upstream 611646 18800999 ~ 18807177 (-)
G92401 NA non-coding downstream 76297 18104989 ~ 18105268 (-)
G92386 NA non-coding downstream 290495 17890342 ~ 17891070 (-)
G92375 NA non-coding downstream 326149 17853927 ~ 17855416 (-)
G92313 NA non-coding downstream 467383 17713903 ~ 17714182 (-)
G92200 NA non-coding downstream 928935 17252430 ~ 17252630 (-)
G92428 NA non-coding upstream 198452 18387805 ~ 18452812 (-)
G92434 NA non-coding upstream 270216 18459569 ~ 18459816 (-)
G92435 uvssa non-coding upstream 272015 18461368 ~ 18461702 (-)
G92440 NA non-coding upstream 292418 18481771 ~ 18482074 (-)
G92441 NA non-coding upstream 294120 18483473 ~ 18483792 (-)
AMCG00017675 NA other downstream 391816 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 694068 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 786516 17387484 ~ 17395049 (-)
G92129 NA other downstream 2150660 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 2313918 15866947 ~ 15867647 (-)
G92436 NA other upstream 273431 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1223634 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2112647 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5128740 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 6075326 24264679 ~ 24270595 (-)

Expression


Co-expression Network