Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017696 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 18843890 ~ 18849241 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K24897 | HOPX; homeodomain-only protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017696 | True | 1369 | mRNA | 0.42 | 2 | 18843890 | 18849241 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017697 | NA | coding | downstream | 15331 | 18823400 ~ 18828559 (-) |
| AMCG00017698 | NA | coding | downstream | 36713 | 18800999 ~ 18807177 (-) |
| AMCG00017699 | NA | coding | downstream | 53550 | 18782730 ~ 18790340 (-) |
| AMCG00017695 | NA | coding | downstream | 106632 | 18727699 ~ 18737258 (-) |
| AMCG00017694 | NA | coding | downstream | 342016 | 18498129 ~ 18501874 (-) |
| AMCG00017703 | sec24b,LOC105905876,LOC107731363,LOC107596339 | coding | upstream | 16515 | 18865756 ~ 18878190 (-) |
| AMCG00017704 | NA | coding | upstream | 28981 | 18878222 ~ 18889526 (-) |
| AMCG00017702 | NA | coding | upstream | 40980 | 18890221 ~ 18896507 (-) |
| AMCG00017700 | NA | coding | upstream | 58022 | 18907263 ~ 18911871 (-) |
| AMCG00017701 | NA | coding | upstream | 63924 | 18913165 ~ 18924436 (-) |
| G92464 | NA | non-coding | downstream | 80229 | 18763097 ~ 18763661 (-) |
| G92444 | NA | non-coding | downstream | 350660 | 18492538 ~ 18493230 (-) |
| G92443 | NA | non-coding | downstream | 353797 | 18489551 ~ 18490093 (-) |
| G92442 | NA | non-coding | downstream | 357886 | 18485267 ~ 18486004 (-) |
| G92441 | NA | non-coding | downstream | 360098 | 18483473 ~ 18483792 (-) |
| G92499 | NA | non-coding | upstream | 821 | 18850062 ~ 18850628 (-) |
| G92539 | NA | non-coding | upstream | 223997 | 19073238 ~ 19073865 (-) |
| G92541 | NA | non-coding | upstream | 276819 | 19126060 ~ 19126349 (-) |
| G92608 | NA | non-coding | upstream | 763464 | 19612705 ~ 19613182 (-) |
| G92609 | NA | non-coding | upstream | 764000 | 19613241 ~ 19617787 (-) |
| G92436 | NA | other | downstream | 380714 | 18462784 ~ 18463176 (-) |
| AMCG00017675 | NA | other | downstream | 1054141 | 17781648 ~ 17789749 (-) |
| AMCG00017665 | NA | other | downstream | 1356393 | 17468605 ~ 17487497 (-) |
| AMCG00017663 | NA | other | downstream | 1448841 | 17387484 ~ 17395049 (-) |
| G92129 | NA | other | downstream | 2812985 | 16030402 ~ 16030905 (-) |
| G92591 | nansa,LOC108416893,LOC108416857,LOC107723182 | other | upstream | 563746 | 19412987 ~ 19419356 (-) |
| AMCG00017725 | NA | other | upstream | 1452759 | 20302000 ~ 20358625 (-) |
| AMCG00017780 | LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 | other | upstream | 4468852 | 23318093 ~ 23321954 (-) |
| AMCG00017819 | NA | other | upstream | 5415438 | 24264679 ~ 24270595 (-) |
| AMCG00017839 | NA | other | upstream | 6096854 | 24946095 ~ 24949136 (-) |
