AMCG00017697


Basic Information

Item Value
gene id AMCG00017697
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18823400 ~ 18828559 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017697
GTGGACACCCCTGGTATAAACCATCACGAGTAACAAATCCAATGAGAACTACATATCCCATGATGCTCTGCCGTTAAAGGAAGTGCGTGGCACTGTCGTGTACAGGTGGAGTTGTAAACATGGAGCGCCCAGAAGTTACGTTTAGTTTGGcttatattgtgtttgtaatttgcttcaTCTTCACACCAAATGAGTTCTGCTCTGCAGGGGTGACCGTCCAAAACTTGTTTTCAGGATGGCTGGGAAGTGAAGATCTCGGCTTTGTTCAGTATCACATTCGCAGAACTGCTGCTACAATCCTGACACACTCCATATTACCGTTAGGTTATTATTTTGGAATGTGCTTTGCAGCGCCAGATAAGAACCTGTTCTATGTTCACCTGGCTAGTGAAGGCTGGCAGCTGTATTTTTCAGTGGCAATAGCACTGCCAGTGCTGAGCTGTGTGCTTGTGTACTATTGGTCAAGAAACAAATGGGGAAATCACCCCATATCCCGGATGCTGGCAGCCCACGCCCTCCCTCAGTCCGGATGGAGGGCTGTAGCCTCCTCCATCAACACAGAGTTCCGCCGAATTGACAAGTTTGCCACGGGTGCTCCCGGTCCCAGAGTGATTGTGACAGATACCTGGGTGATTAAGGTTACAACTTATGAAGTCCAAGTTGCCCAGCAGCAAGACATTCACCTCACAGTCACGAACTCAAAGCAGCATGAGCTGTCTCCGGACTCCAACACCCCGGTGCAGATTCTCACAATCTCGGTGGCCAGTGTGAACCCCCACGTGAAACCCTTTGATATCAGGTTGAATTCTACAGAGTATGGGGATTTGAAGGAGAAGCTCCATGCTCCCATTCGAAATGCTGCCAACGTTGTCATCCACCAGACTCTCAGTGACATGTTCCTGGAAACATTTAAAGCCCATGTGGAAATGAACCAGACGTACTCGCTCCCCAGTGAGCAGGAGCTGGAGCCCTGCATTGGCTGCATGCAGGTGACGGCCAACATGAACCTGGTGAGGCTGTGCCAGGAGGATGAGGACGAGGGGGAGTGCCAGCAGTGCTTCTGCCGTCCCATGTGGTGCCTCACCTGTCTGGGCAAGTGGTTCGCTAGCCGCCAGGACCAGCAGCACCCCGAGACCTGGCTCTCCAGCCGGGTGCCCTGCCCCACGTGCCGGGCCAAGTTCTGCATCCTGGACGTGTGCGTGGTCCGATAGGCACAGGTAGTTGGAAACCTGATGGCTGTTAGAAATACTCTTTGTCATAGCGTTCAAAATGCCGAAAACTGTGTCTAAAACATCTGAGGGCTCCAAGAGACTTCTCAAATATTACTCCTCTTGTTTTCTAGTGACTGCCATTCTACTGGAGCAGCCCCAACCTGAAAGTGTTTTCTTAATGGGGATGTTTACCAATAACTGACTGTGCAGCTAGATTGCCTCCAGTTATCTCCTGACTAATAAACCTGCAATTGTTCTCATTGAGTGAGAATGGAAAAGTTAAGAGAATGGGATGAGTCCACTAGAACTGGAACTAGGAGGAGAGTCTACAGTAATCCCTGATCAACCTAGGTGcatattttatgtgtatttaaattaagtaaagtGTATTTCACAGTTGCCACATGATCTTGAAGGATTgctaaatgtgttgtttatgttGATCAGAACTAGGAATACACTAAGTCggcttaaatgtttttaatcgCATTTCTTCATAAATTCTGTGACTGTAGCTGGATGTAGACTTTTTTCCCCACCAgaaagttttgtattttttctttttttttgtatagcagtggttgggttttattttttattatagcattttacattattttaaagcaacatttaaagTCGTGAagttaggttttattttgtgtcttaatgtcaagaatgtttttcttatttgcaCATTCGTCATAAGACACTAAATCATGCAGAGTACCTTTCCTACATCGGTTTAAATCTTTTGGGAATGTATCTATCATGGCAATCAAAACTGTAGAGCCGGACTATAATctattcttttaaataaacgtatatttccacagtttcttttaaaactgcagttgAGACTCtttatttagttagtttaaGTCAATGATAACCTGCCTGTTTTCAATTATACATGAGCATGGTATTTTGTAAGAcaccagaaaatacattctactttattttctgaaactacaaatatatttaaaatgccaatCTATTACAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22380 TMEM129; E3 ubiquitin-protein ligase TM129

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017697 True 2211 mRNA 0.44 4 18823400 18828559

Neighbor

gene id symbol gene type direction distance location
AMCG00017698 NA coding downstream 16223 18800999 ~ 18807177 (-)
AMCG00017699 NA coding downstream 33060 18782730 ~ 18790340 (-)
AMCG00017695 NA coding downstream 86142 18727699 ~ 18737258 (-)
AMCG00017694 NA coding downstream 321526 18498129 ~ 18501874 (-)
AMCG00017687 zgc:136929,LOC107742495,LOC107665264 coding downstream 554652 18232408 ~ 18268748 (-)
AMCG00017696 NA coding upstream 15331 18843890 ~ 18849241 (-)
AMCG00017703 sec24b,LOC105905876,LOC107731363,LOC107596339 coding upstream 37197 18865756 ~ 18878190 (-)
AMCG00017704 NA coding upstream 49663 18878222 ~ 18889526 (-)
AMCG00017702 NA coding upstream 61662 18890221 ~ 18896507 (-)
AMCG00017700 NA coding upstream 78704 18907263 ~ 18911871 (-)
G92464 NA non-coding downstream 59739 18763097 ~ 18763661 (-)
G92444 NA non-coding downstream 330170 18492538 ~ 18493230 (-)
G92443 NA non-coding downstream 333307 18489551 ~ 18490093 (-)
G92442 NA non-coding downstream 337396 18485267 ~ 18486004 (-)
G92441 NA non-coding downstream 339608 18483473 ~ 18483792 (-)
G92499 NA non-coding upstream 21503 18850062 ~ 18850628 (-)
G92539 NA non-coding upstream 244679 19073238 ~ 19073865 (-)
G92541 NA non-coding upstream 297501 19126060 ~ 19126349 (-)
G92608 NA non-coding upstream 784146 19612705 ~ 19613182 (-)
G92609 NA non-coding upstream 784682 19613241 ~ 19617787 (-)
G92436 NA other downstream 360224 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 1033651 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 1335903 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 1428351 17387484 ~ 17395049 (-)
G92129 NA other downstream 2792495 16030402 ~ 16030905 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 584428 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 1473441 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 4489534 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 5436120 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 6117536 24946095 ~ 24949136 (-)

Expression


Co-expression Network