AMCG00017699



Basic Information


Item Value
gene id AMCG00017699
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18782730 ~ 18790340 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017699
CCTGGGACCCAGAGGTCTTTCACCAAGTCACTGCAGAAGGCAGAGGCTCTTCTAAGGAACACTCTCAACCCTGGTCTAAAGTGGCTTCTGAAACAAAAGTCAGATGACAGTGGCTCTGATCTGGATAATGAGGATACATTTATTGCGTGCGAGAACCACACATCGTGCTCCTCAAAGAGGCTACTGAGGATGGAGCGCTGTGTCCTGGGACTGGGCAGGCAGTGCCATGTGCTGAGGAATCCCAGGACTGGCTCCCTGCAGAGCTGTGTGAAGGAGCTGTCAGTGGACTGTGAATTTTACCATCACCCAGCCTGCGTGGCCTTGAACAAGCATTATGGCAAGCTCCAGCATTTGTTGGAGGAGAGATCGCAGCTTCTCTTCTTCCACGAGTACACCAGGCGCTTAAAAGTTGCCTCGGCTTTTGTGGCAAACTTTTCAGGATTACTTGACAGGGAACATCTTGTGTTAAATGCATCAAGACAAGATATGAAAAGCGCAAGTTCATTCTCAGAATACAGGATTAGCAGTCTTTGTGAAGAGCTGAGGATTCATGTCAGTCACTGGGGCTGTCTTTGCGATAAAGCTAGGAATGACAACTGGCTGAGGCCTGTCTTTTTCCAAAAGCCTGAAATCCTTGAAAGCATGAAGCGAACTTTAAACCTTTTGGGGTTTCAAGCTCTGCTTCTAATGGAGCAATACATTTGCACAGTTTTTCATCTTTTAGCACTAGCTGACCCTGCAGATGTGTCTACAGAGTACCTTGTAGATATTGTGCAAggaactgaaatgtttaattccaTAATCTCTGACACAAGTGTAGAACAAATATATTATGCACTACAAAAATCCAATTACAGCCAGGGAGGCAATGAATCTGAGTTGCTGCCAAAGTGGATGAAATCAATAGTTTCCAGACACAGAGGAAAAGGGGACTTCTTGAAGCCTTTCCCCATTGTACGAATACTGAGGATTGTATCGAAACATAGAGGGCAAATGGCAGCTAATAAATTATATCACTGGATCATTAatcaaaacacttttctttccGGTGTGGATCAGAGTAATTTAAAGTTCCAGAAGTGGGAGAATTTAAAAGTGCCTTTTTTTAATTCGCATTCTGTCGCCTGGACAACCAAAACTGGCCTTTCAAGAACAAAAGTTGGTGAGAGCCAGCAAAGGTCAAGCCCCAGTGCTCAGACTTTTCCCTTGGCAATATTTATAAAGCAAGACAAAGATTTTATGGATAAATTCTTTGTGGCTTTAGTGTCTTCTACTGAAATGTTGGGGCAACATGTTCTGAACAGGCCCAAACCAGATAAACCAAACACAATCAATTGCTCTCTGGGGAACTCCCCAGAGAGCAATGACAACAAAGCAGAAAGTGATGCAAAACTTAGCACAGCTGGAGAGAGGTCAAGCTCTAACAAGTCAAGACTAACAAGTCACAAGTCTGTCCAGTGGCAGGAAACCATGGTCTCAGATGTCACCAGTGTGCTGTGTTCCCAGTATAGAAATCTGCTCTGGAAAGATTTCGGGGAAGCTCTTTTCAGTCTATTTTATCACCCCAGGTGTAAAGGTATTCTTGGAAGCCTGAATCAGTGTAAAGACCAAATGAGTTTTCTTGTTGTGAAAGAACTTCACGGTAGATTAAGAAAAGCATTGATATCTGTGGAGTGTGAGGGAGTGATAAATGACCTTTGTATACAAATGGTTTCAAAGACGGCCTTCGTGTATTGGGATCAAGTGATGTGCAAGTCACTGGGCTCAGGTTTGAAAGACAAATGCCTTCCTGACCCCGAGAGTGTGGACTCTGCTGTCAGAACTGCCACCTCAGGGCTTCTGCAGGAGCTCTTCCACCCTCTGCACGGTGTGCTCAGCTGTCTCGAGGCCTGGAGAAACCGAGTGAAAGATGCCACTCCTGGAAAGTGGGATCCAGCTCTGGAATCTCTTCACTTGACCCTGTTGAGCTGCTCGGTCGCCACTGTACATTCTTCCTCCTACTGGGTCATGACAAAGGCCTACCAGTTTCTCTCATCCTGGTCCCTAAATCAGTTCCTGCTAGTAACACAACGGGATATG

Function


GO: NA

KEGG:

id description
ko03022 Basal transcription factors

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017699 True 2079 mRNA 0.45 4 18782730 18790340

Neighbor


gene id symbol gene type direction distance location
AMCG00017695 NA coding downstream 45472 18727699 ~ 18737258 (-)
AMCG00017694 NA coding downstream 280856 18498129 ~ 18501874 (-)
AMCG00017687 zgc:136929,LOC107742495,LOC107665264 coding downstream 513982 18232408 ~ 18268748 (-)
AMCG00017686 NA coding downstream 593377 18181565 ~ 18189353 (-)
AMCG00017688 NA coding downstream 605719 18174151 ~ 18177011 (-)
AMCG00017698 NA coding upstream 10659 18800999 ~ 18807177 (-)
AMCG00017697 NA coding upstream 33060 18823400 ~ 18828559 (-)
AMCG00017696 NA coding upstream 53550 18843890 ~ 18849241 (-)
AMCG00017703 sec24b,LOC105905876,LOC107731363,LOC107596339 coding upstream 75416 18865756 ~ 18878190 (-)
AMCG00017704 NA coding upstream 87882 18878222 ~ 18889526 (-)
G92464 NA non-coding downstream 19069 18763097 ~ 18763661 (-)
G92444 NA non-coding downstream 289500 18492538 ~ 18493230 (-)
G92443 NA non-coding downstream 292637 18489551 ~ 18490093 (-)
G92442 NA non-coding downstream 296726 18485267 ~ 18486004 (-)
G92441 NA non-coding downstream 298938 18483473 ~ 18483792 (-)
G92499 NA non-coding upstream 59722 18850062 ~ 18850628 (-)
G92539 NA non-coding upstream 282898 19073238 ~ 19073865 (-)
G92541 NA non-coding upstream 335720 19126060 ~ 19126349 (-)
G92608 NA non-coding upstream 822365 19612705 ~ 19613182 (-)
G92609 NA non-coding upstream 822901 19613241 ~ 19617787 (-)
G92436 NA other downstream 319554 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 992981 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 1295233 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 1387681 17387484 ~ 17395049 (-)
G92129 NA other downstream 2751825 16030402 ~ 16030905 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 622647 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 1511660 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 4527753 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 5474339 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 6155755 24946095 ~ 24949136 (-)

Expression



Co-expression Network