AMCG00017700


Basic Information

Item Value
gene id AMCG00017700
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18907263 ~ 18911871 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017700
CATCAACATGCGCCAGGAGCTCAGGGAATCGTCTGTTCTCTCTGTAAAGACACATCCAACTtataatcaaatatttgtttgaattgTTCCTAACTGCTTATCTGCGTCATGACGTGTACGCCGCACACCTTGATGAACACATCAGTGACATACCACGTCAATCCTTGGAACTAATAAAGCTAATACAACAGTTGCAAGTAGCACTGACAGTTGTTAGAGGGTTGTTTCATTGGATATTGTACAATCTGAATTGTACTTCTGGATCCAAGTCCACAAATAAACGGAAGTACACAGGGCAGTGTTTCCAGTTGATCATGGACTCTGTTACTGGTCCAGAAGATgtgccagcagcagcagacgcCCCTTCTCCAAATGAAGGCGGTCAGGAGAGCACGAAGAGCATGCCACTGTCCGCAGCCACCAGAGCTAAGATTGAGCGCAACAGACAGCGGGCTCTCATGTTGAGACAAGCCAGGGTTGCCAGCAGGCCATATTCTTCAGGAGAAGGTGGAACCTGTGCCAAGATTCCCAAAACCATTGACTCAGGTGGAGGCTTCTTcattgaggaggaggaggaggaggaggagcacaAAACGAAGGATGTTGTACACCGGCCAGGCCCAGTGGTTGAGTTTGACTACCTGATGTGTGAAGAATGCGATAAAGCCTTCATGGACTCCTACCTCAGCAATAGTTTTGACTTGTCCGTTTGTGACAACTGCAGGGACAGCGAAAGCAAGCACAAGCTAATAACCCGCTCCGAGGCCAAGAACGAATACCTGCTGAAGGACTGCGACCTGGACAAGCGGGAGCCCATGCTGAGATACGTGCTGAAGAAGAACCCGCACAACCCACGATGGGGGGACATGAAACTGTACCTCAGGCTCCAGGTGGTGAAGCGCTCTCTGGAGGTGTGGGGCAGCGAGGAAGCCCTGGAGGAGGCCAGAGAAGAGCGGGTGGGGAACAGGGAGAAACTAAAGCAGAAGCGGTTCGACAAGAAAGTGAAAGAGCTACGGCGCACAGTGAGGAGCAGCATGTGGAAGAGAGACTCCAGCGCCCACCAGCACAGCTACGGACCAGAGGAAGCACTGGATGACGACGATAACTACAGGAAGATCTGCAGCACCTGTGGCCACGAGTTGACTTATGAGAAAATGTGAACTTTGTCTATGGATCAAATGGAGCAGCGTTCTTACATCATTCCAGAGCCATTATCCCAAGAGTTGCCTGGAGAAAGGATTTCTTGGTAGAATTCAAATCAATAAGACGTTATTTATTGGAACTGTGTGTATCATGTCATGGTGCTGAAACCGGTGTAccttacatttttgtatatgtgtgaATTTCTATATAAACCTCCTCAGTGGGCTGGGGACAGATTAATGCTCTTTGGAGATGTTGGCTGGTTTATGAAGAAATACATCTTTCTTAAGCATGTATTGAATTGTCTTGGAATGAAATGAATTGTTACACAAAGAAAGGTTTCTGGAATTCAAAATATACCGCCAAGACAGATTGTGATAGCATTAGTGACAGCTTTCAAGTACAAACGTgacaggactttttttttttgtagtcatATTTTAGGCATGTATAGCATTATATATAGACCCCTCAGATGAAGCATGTCACAGTGAATTAACCCCTTCACTGTGTTTGTCACTGGCTAAATCATGATGTAGAATGAGTAATAGGCAGGTGTCACTATACCTTTGAGTAAATGAAATAGTGGgtgtatattgtaaataaatatagtaatgTTTGTGAATTTGTACTGTAAATCCTCAGATTTTagaaaagctgtttttgttttattaatctctCGATACTATTACAAATTAACCTCAGGATAAACACTTACAAATttctacaaaacatttaaaccacTGTAATGGTTTTCTGCAAATTTACAACTATCAATATTGTATGGCTGGGGCAACTGAGAGCTGAAGCCAAACTGCAGCTTTAAACTGTCACTGTAGAGCTGCAATGGGATTCAGAGATTAATTTATGCAagtgctttaataaaaaaaactgccttTATGATCTTACTTGCTGAAGTTGAATTTGATTCCTTCCTTAGCTGCAGACTGGTTCATTTGATTGTTTATAGTTTGCAGTTAACTGACTGGAAAGATAACTGCAATCTTACTTTTGAGCCACAGCCAATCTTACAAAATGATCCAATGGTAACCAGAAATGTAAGCCCTCCTTTGTAACCTCTCTTATTCAAATCTAGGATGAGGGCAGCCCTTCCTACTCAATCCAGTTTGATTTGTACTGAATTGGTATTGCAAATAATGAGATAAAAACTCTACTTGGGCCTGGGACTTACAGTGTGTATatgaaatcaaaaatgttaCGAAACACTCATAGGGGAaaatttctttttaatttgaaccACTGTCTGATGATACCCATGGtttcaaaatctaaaaaaaatgaagtCAAAGACaccattatataaaaaaacaggaacagatTCCAGTGTATTTCAACATCAATTCACACAGAATCATCTCCCTTCCACTGACCTGGCAAGTCATACAAACCTGCCTGCATTTCACAAGCTCTTCTACACTACAGTAATGAACACCAATGGGCTCTGAACACTGGATGGCATGGGATGGTCATTGAGAActtaaaaggttaaaaacaaaaaggccaaTCAGTTCAGATTTAGTCACATTGCAGAAGGAAGCTCAGGttgtgtgcatttctttaaCTCTCTCTCTTGAATGAAATTCTAGGTAAACCGCTTAGCCTCCGCAGCATGGGACTGGGTACAGGGGGTTAGAAagaaaaagccaaacaaaacttttaaggagggttgtttaaaaaaagggaaattccACATTTTATGCCAACAAAATACAGCTTCCATCATGCTTTCTGCACAAAGGGAGTGGTGTACTCTTTGTTCCATACACTAACATCCCCGAATACCCAGCCCTCCCCaggaaaagaaattaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10847 XPA; DNA-repair protein complementing XP-A cells

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017700 True 2994 mRNA 0.42 7 18907263 18911871

Neighbor

gene id symbol gene type direction distance location
AMCG00017702 NA coding downstream 10756 18890221 ~ 18896507 (-)
AMCG00017704 NA coding downstream 17737 18878222 ~ 18889526 (-)
AMCG00017703 sec24b,LOC105905876,LOC107731363,LOC107596339 coding downstream 29073 18865756 ~ 18878190 (-)
AMCG00017696 NA coding downstream 58022 18843890 ~ 18849241 (-)
AMCG00017697 NA coding downstream 78704 18823400 ~ 18828559 (-)
AMCG00017701 NA coding upstream 1294 18913165 ~ 18924436 (-)
AMCG00017707 cplx2,LOC107751330,LOC103366469,LOC107562368,LOC107390991,LOC106528338,LOC102782538,LOC100705952 coding upstream 284250 19196121 ~ 19202825 (-)
AMCG00017709 clta,LOC105903562 coding upstream 455843 19367714 ~ 19384083 (-)
AMCG00017711 NA coding upstream 514168 19426039 ~ 19433689 (-)
AMCG00017715 ostc,LOC106609071,LOC106577458 coding upstream 739645 19651516 ~ 19654680 (-)
G92499 NA non-coding downstream 56635 18850062 ~ 18850628 (-)
G92464 NA non-coding downstream 143602 18763097 ~ 18763661 (-)
G92444 NA non-coding downstream 414033 18492538 ~ 18493230 (-)
G92443 NA non-coding downstream 417170 18489551 ~ 18490093 (-)
G92442 NA non-coding downstream 421259 18485267 ~ 18486004 (-)
G92539 NA non-coding upstream 161367 19073238 ~ 19073865 (-)
G92541 NA non-coding upstream 214189 19126060 ~ 19126349 (-)
G92608 NA non-coding upstream 700834 19612705 ~ 19613182 (-)
G92609 NA non-coding upstream 701370 19613241 ~ 19617787 (-)
G92657 NA non-coding upstream 954101 19865972 ~ 19866417 (-)
G92436 NA other downstream 444087 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 1117514 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 1419766 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 1512214 17387484 ~ 17395049 (-)
G92129 NA other downstream 2876358 16030402 ~ 16030905 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 501116 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 1390129 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 4406222 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 5352808 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 6034224 24946095 ~ 24949136 (-)

Expression


Co-expression Network