AMCG00017703 (sec24b,LOC105905876,LOC107731363,LOC107596339)


Basic Information

Item Value
gene id AMCG00017703
gene name sec24b,LOC105905876,LOC107731363,LOC107596339
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18865756 ~ 18878190 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017703
ATGCTCTATCTGCAATTACCTGTCATAACGTCCAACACCATTGTGAGATGTCGCTCCTGTCGAACTTATATTAACCCTTTCGTGTCCTTCCTGGACCAGAGAAGGTGGAAATGTAACTTATGCTACAGAGTGAATGATGttCCTGATGAGTTCATGTACAATCCCCTGACACGGTCCTATGGTGAACCTCACAAACGACCAGAGGTACAGAACTCAACAGTGGAGTTCATAGCCTCTTCAGATTATATGCTGCGTCCTCCTCAGCCTGCTGTGTACCTGTTTGTCTTAGATGTCTCTCACAATGCAGTGGAAGCTGGCTATCTGAATGTACTTTGTCAAACACTATTGGAAAACCTGGAAAAGCTGCCTGGGGACACACGGACAAGAGTGGGATTTATAACGTTTGACAGCACTATTCACTTTTATAATCTGCAGGAGGGGCTGTCACAGCCCCAGATGCTTGTGGTCTCTGATATTGATGatatctttataCCTACTCCTGATAGTTTACTAGTAAATCTCAAGGAGAGCAAAGAGCTGGTGAAGGACTTGTTGAATGCCCTGCCCAACATGTTCACCCACACCAGAGAGACCCACAGTGCCCTGGGGCCCGCCCTGCAGGCTGCCTACAAGCTCATGTCCCCGACTGGAGGACGGATTTCTGTGTTCCAGACGCAGCTGCCCTCTTTAGGAGCTGGTCTTCTGCACTCCAGAGAAGACCCCAACCAAAGATCTAGCACTAAGGTTGTGCAGCATTTAGGACCAGCGACAGACTTTTACAAGAAGCTGGCGTTGGACTGTTCTGGACAACAGATAGCAGTGGACCTCTTCCTTCTGAGTTCCCAGTACTCTGATATGGCATCGTTAGCTTGTGTGTCTAAATATTCAGCAGGAAGCATATTTTACTACCCATCTTTCCATGATGTCCACAACCCCACTCAGATGGAGAAGTTTCAGAAGGACCTTCAGCGATACTTAACCAGGAAAATTGGCTTTGAGGCAGTAATGCGAATAAGGTGTACCAAAGgtCTTTCAATCCACACGTTTCATGGGAATTTCTTTGTTCGATCCACTGACCTGCTGTCCTTGGCAAATGTCAATCCAGACTCTGGGTTCGCTGTGCAGATGTCGATTGAAGAAAGCCTAGCAGACACgtctttagtttgttttcaagCAGCTCTTCTGTACACGTCCAGCAAAGggaaGAGAAGAATTCGGGTGCACACGTTGTGCTTGCCTGTTGTGAACTCACTGAGTGATGTGTTTGCTGGGGCTGATGTCCAGGCGAtcacatgccttttggcaaatATGGCTATCGACCGATCTGTGTCTTCAAACTTGTCGGATGCGCGAGATGCCCTGGTAAACGCAGTGGTGGACTCGCTGTCTGCGTACCGCTCCACTGTTTCCAACCTCCAGCAATCCGGCCTAATCGCCCCAGCCTCGTTGAGGCTCTTTCCTCTCTATGTATTGGCACTGCTCAAACAGAAGGCCTTGAGAACAGGCACCAGCACGCGCCTGGATGACCGAGTCTTCGCTATGTGTGAATTCAAAAGTCAGCCCCTGCAGCAGATCATGCGCATGATCCATCCCAACCTGTACAGGATAGATGACCTGTCTGATGAGGGAGCACTTCATGTCAATGACACCATGGTGTCTCAGCCGCCGATCCTCCAGCTCACCGCGGAGAAGATCAGCATACAGGGGGCTTACCTAATGGACTGTGGCACAactCAGATTCCAGAACTAGAGACGCCTTCCTCTGAAAGAACGAGATCGTTTATTAATTGGCTTCAAGAGAACAGGTCATTCAGCCCTATCCTTCATGTTGTGAAAGATGACTCATCAGCTAAAACCAACTTTTTCCAGCAATTGATTGAAGATCGAACGGAAGCAGCACTATCCTATTATGAGTTTTTGCTCCACATTCAGCAGCAGTTGTCAAAGTAAATAGCCGTGCAACACTAGCCTAAGGTGTAAGGGTAGGAGTGTCTTACGGTACCTACAATGTGGCAAATCTTTAGAGGAAGGCCTCCACCTGGCTTTGTAGTCTACGTCTGTGGAGATTGCAGTAACTACCAAACTGGTAATGCTGTGATGACTGAGCCGCTAATGTTTGGCCTAAAGCCATTGGAGGTTGATCAACCTGAAAGGAATTTTTGGAAGGAAAGGGGTTTACAGTAGCAGGAATGGCATCTGCAACAGGTTTCTTACCTTCTTCCTTTAtagaaaaagaagaacatgCATATTGATTCATAGTTGCTTTCAGCGGTTGGAGTTGCATAGGTAGCAGTTCACTGAGACAATCTTTCTTTGTGGAATGTAAGTGGACCCGAGAGCTACTTCATACATTTAACACaagaaatgttttgcaaaatggGAGGCAGAGCAgatgtgcatgtttgtttttgtttgtttgtttttggtttaatccGGTTTTTAAATTGGTTGAGTGTCCATTTAATTATGACAAATGCCTTCCCATTTTTTGCAAGAATCATAGGAATTGGGGAACCAGTTTTGATGTACATTGTAAAGCCATGTATGGTTTGTGTCTGCTAAATGGAGAGAGTGCACTGTACTGTGCACATAGCTCGAATGAATAGCACTGCCTGAAGTGTAGAACAGTCCAGGTTTTTAATGTCCAGGTGAGACTTTAGTTCCTGTACaacccacttttttttttttttcctctgccaATAACAGAAATTGTTCCACTTTGTAATTCTCTTGCAAATCTTttatgtgaaattatttatgatctgcttattaaataaaacaaaacaata

Function

symbol description
sec24b Predicted to enable SNARE binding activity and zinc ion binding activity. Predicted to be involved in COPII-coated vesicle cargo loading. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SEC24B (SEC24 homolog B, COPII coat complex component).

NR:

description
PREDICTED: protein transport protein Sec24B-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017703 True 2789 mRNA 0.45 16 18865756 18878190

Neighbor

gene id symbol gene type direction distance location
AMCG00017696 NA coding downstream 16515 18843890 ~ 18849241 (-)
AMCG00017697 NA coding downstream 37197 18823400 ~ 18828559 (-)
AMCG00017698 NA coding downstream 58579 18800999 ~ 18807177 (-)
AMCG00017699 NA coding downstream 75416 18782730 ~ 18790340 (-)
AMCG00017695 NA coding downstream 128498 18727699 ~ 18737258 (-)
AMCG00017704 NA coding upstream 32 18878222 ~ 18889526 (-)
AMCG00017702 NA coding upstream 12031 18890221 ~ 18896507 (-)
AMCG00017700 NA coding upstream 29073 18907263 ~ 18911871 (-)
AMCG00017701 NA coding upstream 34975 18913165 ~ 18924436 (-)
AMCG00017707 cplx2,LOC107751330,LOC103366469,LOC107562368,LOC107390991,LOC106528338,LOC102782538,LOC100705952 coding upstream 317931 19196121 ~ 19202825 (-)
G92499 NA non-coding downstream 15128 18850062 ~ 18850628 (-)
G92464 NA non-coding downstream 102095 18763097 ~ 18763661 (-)
G92444 NA non-coding downstream 372526 18492538 ~ 18493230 (-)
G92443 NA non-coding downstream 375663 18489551 ~ 18490093 (-)
G92442 NA non-coding downstream 379752 18485267 ~ 18486004 (-)
G92539 NA non-coding upstream 195048 19073238 ~ 19073865 (-)
G92541 NA non-coding upstream 247870 19126060 ~ 19126349 (-)
G92608 NA non-coding upstream 734515 19612705 ~ 19613182 (-)
G92609 NA non-coding upstream 735051 19613241 ~ 19617787 (-)
G92657 NA non-coding upstream 987782 19865972 ~ 19866417 (-)
G92436 NA other downstream 402580 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 1076007 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 1378259 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 1470707 17387484 ~ 17395049 (-)
G92129 NA other downstream 2834851 16030402 ~ 16030905 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 534797 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 1423810 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 4439903 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 5386489 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 6067905 24946095 ~ 24949136 (-)

Expression


Co-expression Network