AMCG00017709 (clta,LOC105903562)


Basic Information

Item Value
gene id AMCG00017709
gene name clta,LOC105903562
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19367714 ~ 19384083 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017709
GGACCATCCAGCTCCCTGCGCTTGTCTTACGTGATCTGTGGTTGGTCGAAATGGATGTCGATCAAAGCCTTCTGTATCTGATTGGCTCCCACGGTTTCCGCTTTATCGCACGCTGAAGCCATTTTCAACGCCCTCTGTTTAATCTAGGTCTGACCTCTCTCACTGACTGTAATTGTAgtccattttcatttattttcacccTTTTTTGTCCCTCGGCAGGGGTCTTTCTCTCTTTGTAGGTAGATATGGATGATTTCGATTTACTTAACGCCCCGCAAAATCCTGCCGGGAACGGGGTTGCAGCGGAGGAGGACCCCGCGGCTGCTTTCTTGGCCCAGCAAGAGAGCGAGATAGCGGGGATAGAGAACGACGAGGGGTTCAGCATCCTGGATAGCGGGGACGTCCCGTCTTCGCTGGGTAACAGTCTGACAGCTGACATGCTCCAGGAAACAAACGaagCCATTGATGCTGCATTTAATGGAGAGGTCTATCAGGAGAGCAATGGGCCCTCGGACGCGTATGCAGCCATATCTCATGTGGATCGTCTGCAGGCAGAGCCAGAGAGTCTCCGCAAATGGAGGGAGGAACAGCTGGAACGCCTGGAGGTCCTGGATGCAAATTCCCGTAAGCAGGAGACAGAGTGGAAGGAAAAAGCAAAGGTAGAGCTTGAAGAATGGTACACCAGGCAGGACGAGCagctggagaaaacaaaagtcAATAACAGAGCGGCTGAAGAGGCGCTCGTGACGGATATGGATGAGAACAACCCTGGCACCGAGTGGGAGCGTGTGGCCCGTCTCTGTGATTTCAACCCCAAGTCCAGCAAGCAGTCCAAAGATGTGTCTCGCATGCGATCTGTTCTCATTTCTATGAAGCAGACCCCACTGGTACACTGATGTTCCCAAGCACAAATGAACAACACTATCACCACCACTACAACTGTTAGTATggcaatattttaaacattaaaactcaGAGAAACTGCAGTAAATGGATTGATTCCCCttcaattatcttttttttttttttaattcttattctTTTAAGGACCAAAAGTAATTGTGCGTGTTCCCTTTAGAGctgatttgtgttttcatttaagatctatgcatttctttttgaaCATCCCAGGAATAAAGTAATATGTGTtttgaagtgtgtgtgagtgtatgtatggtgtggtatattatatattatatatatataatatataatatataatgagcTGTAGCCCCAGTGTTGCTTCTTGTGCATTACAGAGTATCTTGTCTTCAATGTATCTATAAAGTGGTATTAAAAGTGTATGAAACCCTACTTGGTGTGTCTTGTGAATACCTACTTTTGccccatttaaaatgcatgcatattaGCAGACTGTCAATGTGATTTCTTGAATTATTCCTGTCAGAAGTGAGCTGTGTTTTATAGATCATGGGACAGCCAAACTACAGTAATAAAGCTTTCCCAGATTTTACAAATGAAGTCGTATATCAAATGCATCTTCCAGGGTGTCTGCTTTACCcaaattaatgttgaaacatttgaaacatcTTAAATGGTAATAGGTATTTTAAGAATACTAATACATTGTTGTCCCCGTGTCCTTGACATTAAATCTCGAAAATgcttttgattaataataaatatttttgaatttaCATTTGCTGGATTTATGGAGAAAACAACTTTCAATTTAGTCTGTTGTTAAACAATA

Function

symbol description
clta Predicted to enable clathrin heavy chain binding activity. Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin vesicle coat. Predicted to be active in plasma membrane; postsynaptic endocytic zone cytoplasmic component; and synaptic vesicle membrane. Orthologous to human CLTA (clathrin light chain A).

NR:

description
PREDICTED: clathrin light chain A-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04644 CLTA, LCA; clathrin light chain A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017709 True 1714 mRNA 0.42 5 19367714 19384083

Neighbor

gene id symbol gene type direction distance location
AMCG00017707 cplx2,LOC107751330,LOC103366469,LOC107562368,LOC107390991,LOC106528338,LOC102782538,LOC100705952 coding downstream 164889 19196121 ~ 19202825 (-)
AMCG00017701 NA coding downstream 443278 18913165 ~ 18924436 (-)
AMCG00017700 NA coding downstream 455843 18907263 ~ 18911871 (-)
AMCG00017702 NA coding downstream 471207 18890221 ~ 18896507 (-)
AMCG00017704 NA coding downstream 478188 18878222 ~ 18889526 (-)
AMCG00017711 NA coding upstream 41956 19426039 ~ 19433689 (-)
AMCG00017715 ostc,LOC106609071,LOC106577458 coding upstream 267433 19651516 ~ 19654680 (-)
AMCG00017716 rpl34,LOC107566275 coding upstream 272850 19656933 ~ 19659528 (-)
AMCG00017720 NA coding upstream 312470 19696553 ~ 19810128 (-)
AMCG00017728 NA coding upstream 484916 19868999 ~ 19869457 (-)
G92541 NA non-coding downstream 241365 19126060 ~ 19126349 (-)
G92539 NA non-coding downstream 293849 19073238 ~ 19073865 (-)
G92499 NA non-coding downstream 517086 18850062 ~ 18850628 (-)
G92464 NA non-coding downstream 604053 18763097 ~ 18763661 (-)
G92444 NA non-coding downstream 874484 18492538 ~ 18493230 (-)
G92608 NA non-coding upstream 228622 19612705 ~ 19613182 (-)
G92609 NA non-coding upstream 229158 19613241 ~ 19617787 (-)
G92657 NA non-coding upstream 481889 19865972 ~ 19866417 (-)
G92660 NA non-coding upstream 483335 19867418 ~ 19867636 (-)
G92682 NA non-coding upstream 521909 19905992 ~ 19920152 (-)
G92436 NA other downstream 904538 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 1577965 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 1880217 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 1972665 17387484 ~ 17395049 (-)
G92129 NA other downstream 3336809 16030402 ~ 16030905 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 28904 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 917917 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 3934010 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 4880596 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 5562012 24946095 ~ 24949136 (-)

Expression


Co-expression Network