AMCG00017727 (ppp3ca)


Basic Information

Item Value
gene id AMCG00017727
gene name ppp3ca
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19948192 ~ 19954812 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017727
GTGCTACTGCATCAGCACGCAAAGAAGTAATCCGCAACAAGATACGAGCCATTGGCAAAATGGCCAGGGTATTTTCAGTTCTAAGagaagagagtgagagtgtcCTTACACTAAAGGGTTTGACTCCAACCGGGATGCTTCCCAGTGGTGTGTTGTCAGGCGGGAAGGAGAAGCTACAAAATGCTACTATTGAGGCTATTGAGGCTGATGAAGCCATCAAAGGATTCTCACCTCAACATAAGATCACAAGCTTTGAAGAAGCCAAAGGCTTGGATCGCATCAATGAGAGAATGCCTCCCCGTAAGGACGCCATCCCATCCGATGCCAGCCTCAACTCGCTTAACAAGGCCATCTCCTCAGAGACCAATGGCACTGATAGCAAAGGCAGTAGTAGCAGCAACATCCAG

Function

symbol description
ppp3ca Predicted to enable calmodulin binding activity and calmodulin-dependent protein phosphatase activity. Predicted to be involved in calcineurin-NFAT signaling cascade. Predicted to be part of calcineurin complex. Predicted to be active in cytosol. Is expressed in brain; heart; integument; and olfactory epithelium. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 91. Orthologous to human PPP3CA (protein phosphatase 3 catalytic subunit alpha).

NR:

description
serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017727 True 407 mRNA 0.49 4 19948192 19954812

Neighbor

gene id symbol gene type direction distance location
AMCG00017724 ddit4l coding downstream 57663 19888936 ~ 19890529 (-)
AMCG00017728 NA coding downstream 78735 19868999 ~ 19869457 (-)
AMCG00017720 NA coding downstream 138064 19696553 ~ 19810128 (-)
AMCG00017716 rpl34,LOC107566275 coding downstream 288664 19656933 ~ 19659528 (-)
AMCG00017715 ostc,LOC106609071,LOC106577458 coding downstream 293512 19651516 ~ 19654680 (-)
AMCG00017726 LOC102788851,LOC106608629 coding upstream 18606 19973418 ~ 19986615 (-)
AMCG00017731 nfib,LOC106608626 coding upstream 439065 20393877 ~ 20408258 (-)
AMCG00017729 NA coding upstream 503403 20458215 ~ 20482752 (-)
AMCG00017736 tmod1,LOC102782831 coding upstream 543455 20498267 ~ 20514665 (-)
AMCG00017734 LOC103364796,LOC106608959 coding upstream 565406 20520218 ~ 20550836 (-)
G92682 NA non-coding downstream 28040 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 80556 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 81775 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 330405 19613241 ~ 19617787 (-)
G92608 NA non-coding downstream 335010 19612705 ~ 19613182 (-)
G92714 NA non-coding upstream 460494 20415306 ~ 20415612 (-)
G92798 NA non-coding upstream 669331 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 679860 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 717253 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 721847 20676659 ~ 20734422 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 528836 19412987 ~ 19419356 (-)
G92436 NA other downstream 1485016 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2158443 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 2460695 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 2553143 17387484 ~ 17395049 (-)
AMCG00017725 NA other upstream 347188 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 3363281 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 4309867 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4991283 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 5042732 24997544 ~ 25018212 (-)

Expression


Co-expression Network