AMCG00017733


Basic Information

Item Value
gene id AMCG00017733
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20603355 ~ 20616229 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017733
CAGATATGGTGGAGACAATTTTGTCTGAAGAAGTTAAATCTGTCACCAGTGCAACAGAAATGCTCATGCAGAATCTGATGGCACTAGATCAGCCAGGGTGGTTTATAGCTTTTGTGGACATCCTGAATGCAGAAGgttACACCGGGCTTTGTGAGGCTATTAAACAATGGGACTTCAAAACAATTGAGAGTATGGAAccttttaaactgcttttagAACGCATTGAACAATCCATCACCAAACAGATAAAACCCACAGAAATTATACCTCTTATGGGAGAGTGCCTCTTTGACCGTGAATATGAAGAGATAAGAGCGgtgaCTGATCGTAAGGGGAACATTGCTGGAGCTCAGAAACTGATTGAATTATTGAAAAGATCAGACAAATGCAACTGGTACAAGTCCTTGACATTGGCCCTGCAGAGTTGCAATTATCAGACTGCTCTGGATTTAATGGACCACGACACAGGAGCCAGCAGTGAAGACAGTGATGGAATAAAGCTAAGAAATTATCAAAAAGAGCTCTGTATCTCCGCTTCTAGAGGCGAAAATACCATCATCTGTGCTCCAACAGgcTGTGGGAAAACAATCGTAGCTCTTGCTATCTGTGAAAATCACCTGAGAAGTAGTCCTAGACAGAAACCCAAGATTGTCTTCATGGCCACAAAGGTGGATGTATATGAGCAGCAGCACAAATTGTTCCTAAAGCATTTCGGAGAGGGAAATGAGGACGTTCGGGTTGCAGGTATCTGCGGTGAAATGGGAGATCATCTTCCTGTTGGAATGTATGTAGAAGAAAACGACATAATTGTGCTGACACCTCAGATTTTGGTGAATGCTCTGAAAAGTAAAGAGGTGCAATCACTATCCATCTTTACTCTAATGATATTTGATGAATGTCATAATACTACCGGAAAGCATCCCTACAATGTCCTTATGACCAACTACCTGGACTACAAAATGAGCAACAGGAATGCAGCCCTGCCACAGATCGTTGGCCTGACAGCTTCAGTTGGAATAGGCAATTTCAGGAATACAGAAGAGGCCACAAATAATATTTGTCAGTTATGTGCAAACCTGGATGTGAGAGTCATTTCAACTGTGCAGGAAAACGTGGAGGAACTCCGATCATTTGTACATAATCCTGAGAAAGATTTCTTCCCAGTGGAAAAACAATCCAATGATCCCTTTCTTTCCATAATTAGCAAAATAATGTCTAACATTGAAGACTTGGCAACAACCGTATACAACATAGAGTCTCTGTCGAACATTCAGACCAAAGATTATGGGACACAGAAGTATGAACAGTGGATTGTTGATGTGCAAAAGAAATGTCGAACACTGCACTTGAACGATAAAATGGAGGAGAGTCGTGTTTGCAGAGCCCTGTTCAATTACACTGAGCATCTAAGGAAATACAATGATGCTCTTATTATTAACGACGATGCGCGGACCAAGGATGCCCTGGATTACTTGGAAGCATTCTTTGAACAGGTCAGAAACGCCGGGTTTGATGAAACGGAACAGAAGTTAACAGCTTTCTTTGATGAGAACCCGAAGCTGAAGACCCTGAAGTACATCCTGGAGGAGGAGTACAGGAACAACAACCAAACCCGCACTGTGCTCTTCGTCAGGACTAGAGCCCTGGCAGACGCCATGAAGAACTGGATTGAAGAGAGTGAGTCTCTGAAGTTCCTTAAACCTGGAGTGCTAATAGGTCGCGGAAAGCGCTCTCATCAAACAGgGATGACATTTACATCCAAGAAGGGGGTACTGGATTCATTTAAAAGTTCAGATCAAAGTAAAATACTGATCGCCACCTCAGTGGCAGAAGAAGGGATTGATATTCCCCAGTGTAATCTGGTGCTGATGTACGAGTATGTTGGCAATGTGGTCAGGATGGTTCAAGTCAGAGGTCGTGGAAGAGCACAAGGCAGCAAGTGTTTCTTTGTGTCCAGTACAAAAGATCGCATTGAGAAGgagaaattaaatatgtacCGTGAAAAAATTGTGAATGAAGCCATCATTGAATTACAGAATTCCAAGGACTCCATGGTTGCTAAGATTGATACTTATCAAAGAGAAGACAAAAGGAGACGGGATTACATGAATTCAGCCCCACAAAGGCCATTAACAGATGCCAGCTTTGAACTCCTTTGCTCAAAATGCAAGACCTCAGCTTGTTTTACTGATGATATTAGAGTACTGCAGGATTCGCACCATATTGTTCTGGATAAAACCATCTTTGAGCGTTTCATCCAAAAGCCCCATGAAAAACCTAAGAACTATGGTGGGTtcaagaagaagatgaagatgtTTTGCAAGAAGTGTTCGCATGACTGGGGGATAATTGCCTCTTATATGAGCATTGATGATCTGCCAGTCATCAAAATAGACAGCTTTGTGGCTTTGAACTGTGTGACCAGAAAGCAACAGTATTTCAGAAGGTGGAGAGATGTCACATTTACTATGAAAACATTCGATATTACAGAAATATCTCCTTGctgaataatttcaaaaataatttgccATTTTGAATGTTACAATGATGATTAATGTACAACTTTGATTACTAAAGCTCCTGtgcatattttaatgaaataaatgtgcacacaatgatacacaTTCACAGAAGACTGCTGTTATATTCACATCTGAAACCATTATTGTGAGCAGTTAATGTTCATAGCACTAACAAATTATGGGTTTATGGCAAAGCAAAACTTATTTGATACTTGCTTTAAAATTCACTTCACTCAATTAAGCATTATATAAACTATACTTGCCTCATGTCTTatcttgttatatttttaaattgacgtactgtaaaaatagtttttactaTAACAATATAGTAACACTTACATAAATGATAATGTAGAAATGcactataatttaatttaattttgaattttctaatatctttaaatgcaacAGTGTAACAACATATAATATGCacttatattaatgtattactattaaataaatgcatatttcgttgttgttttctttaagaATCTGAATACATTAAGGCATTGAACTTTGTCTTGTTTGATCAGTTAAAAATTTAGAACTTTCATGTAATTTGATTGTACCATACCTATTATTTGTGATGTGACAAAGGCTATTTTTGTTACCTTCATGTCACTGGAAGGCAAAACATGGGAAGTCCTTATGTGTGCAGACTTCTTTAATACTGTAAAAGCAATATGTACTTTTTCAGTGACCATCATAAATTAATCTCTGCTTAATCTCTCATCTCTTATGACTTCCTTTAGcgttgtatttaaatatataatgtggaATCTTGcatattattgaaaatgaaatacaat

Function

GO:

id name namespace
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12646 DDX58, RIG-I; ATP-dependent RNA helicase DDX58

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017733 True 3334 mRNA 0.38 16 20603355 20616229

Neighbor

gene id symbol gene type direction distance location
AMCG00017739 mtap,LOC107595051 coding downstream 1954 20595312 ~ 20601401 (-)
AMCG00017735 mtap coding downstream 18394 20571457 ~ 20584961 (-)
AMCG00017738 NA coding downstream 31945 20553667 ~ 20571410 (-)
AMCG00017734 LOC103364796,LOC106608959 coding downstream 52519 20520218 ~ 20550836 (-)
AMCG00017736 tmod1,LOC102782831 coding downstream 88690 20498267 ~ 20514665 (-)
AMCG00017741 NA coding upstream 4177 20620406 ~ 20622105 (-)
AMCG00017737 ndufb6 coding upstream 9855 20626084 ~ 20627983 (-)
AMCG00017749 LOC107702147,LOC107737977 coding upstream 36916 20653145 ~ 20667672 (-)
AMCG00017748 NA coding upstream 73992 20690221 ~ 20741395 (-)
AMCG00017751 NA coding upstream 131926 20748155 ~ 20774424 (-)
G92714 NA non-coding downstream 187743 20415306 ~ 20415612 (-)
G92682 NA non-coding downstream 683203 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 735719 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 736938 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 985568 19613241 ~ 19617787 (-)
G92798 NA non-coding upstream 7914 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 18443 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 55836 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 60430 20676659 ~ 20734422 (-)
G92836 NA non-coding upstream 201446 20817675 ~ 20822960 (-)
AMCG00017725 NA other downstream 244730 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1183999 19412987 ~ 19419356 (-)
G92436 NA other downstream 2140179 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2813606 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3115858 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2701864 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3648450 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4329866 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4381315 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5328912 25945141 ~ 25957648 (-)

Expression


Co-expression Network