AMCG00017734 (LOC103364796,LOC106608959)


Basic Information

Item Value
gene id AMCG00017734
gene name LOC103364796,LOC106608959
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20520218 ~ 20550836 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017734
CTAATTAGCAAGGGCTGGCCAAGGCTGGCCAATCGGCTCTCGGGTAAAACAGCTGAGCGGCCGGCGGAGAGGGGCTGTGAGAGCCGCACTGAGAGTGCAGAGAGAGGCGGAGAGGCGAGCCCGACCCAGCTTTAGATGGCGTTTCCCAGCGTCGCTGCTCTGGTGCTGTCGTCTTGAAACCCCGGCGTGGGCATTGCTGTGTACAGGACTGCGGCGGCCACTGTCCAGAAACCAAGATCCCAGGTTCAGGATGTCGGAAAATGAGTTGTCCAAGAAGATGCTGCGAGCCGTGCTGCAGTCAAACAAGAATGGATTATCTCTTACCCGGCTGCAGGCCGAGTACAAAGCCCTCACTGGCGACTTCATCCCACACAAGCAGCTGGGCTTCCCTTCCCTTGAGGGTTACCTGTGCAGCATTCCCTCAGTGGTCAGAATGGAGCACAGTCGTATGGGAGAGgttttctgCTTCGCTACAGTGTGTAATGAGACAGAACACATCGCCCAGCTAGTTGCTCGGCAGCGGACCTCTCGGAAGACGGGGAAATCGCAGTTGGTGAACTGTCAGATGAGGGTGAAACTTGCCACTTTTATGCCAAACGCGAAGCCAAGGTCGTCTCTCAGGCAGCCGGAGCACATGGGCCGCTCCAGCCGTAGCCTGACCCAGCTGTCCATAGGCAACCGGGGATATGGAGCTTTCAGCCATGCCTTGATGAGAGACGCTCAGCACGATGCAAAAATCACCACAGCCAACCAAAACCGAACCCCCACCATCCAAACTCGGAAACCGCCAACGCCAAGTGAGAAGTCTGACAAGAGAATTACTCTCCCTACCAGATTTCAGAGGGAACTACAAGCTCACCTTTCCAGAAACCCCCAGCAGACCAACGctaaTCTAAATGAAAGCCTTGCTCCAGGAAAAACCAGAACAACTCAAACCAGCACTTATAATACGCAGTTGGTCCAGAATCGTCTTAAAGACGTACTAAACAAGTACAGCAATGGATTTTGGGTCTCCAAGCTGCCACAGCTGTACAAGGAGCTGTATCACCAGGAGCTGCCTTCTGATGTCATAAGGGAGCTGGAACACTGGACCCATGTTTGCATAGTGGAAAAACCCTGTAGCACCAATCCCTCAGAGCTGCTCCTGTACCCTGCAAATGACTTGACTCCAGTGAAGACTGCTCCAGTCCCCAGCAAGATGTCCCCTGCCCTGGGGAAGCCAGTGTCTCCCACGAAGCCTGTGTCCTTGGTCTCCTCTAAGTCTGCAGTGGCTCCGGAAATCAAGCTGAAGCTGGCGGAGCTGTTGGTGAAATACAGCCATGGCCTCTGGGCCCACGCACTCCCCAAGCTCTTCCAAGATGCGTACAAGATGAAGTTCCCTGAGCATGTTCTCAATGACCTCTCACTGATCAGTGATGTCTGTACTGTTGACTATCCTATGCCTGACAACACCAAGAAAGCCATTCTGTATGCTCGAAGCAGCGAGGATGAGAACCAGAACAAGGTGGATTTAAAGATTCCCCGGGTCATTGAAACAGCAGGGCAGCGAATCAGCTCGGTTGCTGTCCCCCCCCTGGTGATCCCAAAGGAGGAGTACCCTTCAGTGCTGGTGGTGGAGGCCAGCAACACAAGCGACGTCATTCTCAGGTACATTGGAGAAGGCTACTCTCAGGCCCAGGAGGCACTGGAAGATAACATGAGAGAGTTCTACAACCAGGACAACAAGAAGCCTCTGCAGTCTCCGGTTCCTGGGCAGCTAGCGGCTGTCAGggctgaggaagaggaggagattTTAAGAGCCAGTGTTTCTGAGGTGATGACGGACAGGGTAAAGGTTTACTATGTGGATCATGGATTTTTTGAAGTCATCAACAAAGGCAAACTCCTGGAACTAGATGAAAAATTTTTTACTTTACCCTTCCAAgctgcaaaatgtaaattagcAGGACTCGAACCTTTCAGTAAGGAGCCTGCGGTCTTGAAACAATTTGAGTCAATAGCCTGTGGCAAGATCCTATTGGCAGAGAttttagagagagaggaggtgcCCCTGGTTGTCCTCTATGACACATCCCAGGATGATGATGTCAACATTAATGCGTCATGCATGAAGGCCTTGCAGGACAGATCTCTGGAGAACAGTCTACAGGTGAACAGTGTATATATGAACGTTGCCATCACCAACGTTTGTTCTGATGGAACCATTTACTGCCAGTTACCTTCACGTGGTCAGACGAAGTTGAATGAAATACtggagaaaactgaaaactacTTCCATTCCCGGGTGACATCTGAATTTTTGGTCTCAAAGCCGTTTTGTGGTAAATGCTGCCTATCCCGCTATAAAGGAAAATGGTCCCGTGTGGAGATCACCAACCTGCATGGCAGCCGTGTGCTGGACATTCAGTTTGTAGACCTTGGCGTCCCGGCTTCGGTGGAGGTTATCGAGCTCCGGGAAATCCCTCCTCCTTTTCTACGTGATCTCATCACCATTCCTCCACAGGCAATAAAGTGCTGTTTGGCGGACTTGTCCATCAGTGTTGGCTCGTGGACTCCAGAGGCTGTTCTGTGGCTCCGAGACACAGTGTTGAACTCCACTGATTGCAGCATGAAGGTCTCCAAACTGGATGAGACAAAGGGCTTAGTGAACATTTACCTGTTCACCTCCAAGAATTTCTACGACACAGAGCGCAGCATCAATTACCAAATTGCAGACTCGGACCTGTGGAAGCACCAGAAGGATGTCTTCCTGAGCAGCAGTTCGGTGAGCCCCATGAAGATGAGCAAAGAGCAGAGCAGTCCAGGCCCCAAGAAAATCATGCTTGATGCCAGAGACTGCAGTAGTCACACGTCTGCTCGGCTTCCCCCTCAGCTAGAGCTGCCACCGGTCGGCCAAAACATGGACATCTACGTGTCGGTGGCCTGCCACCCTGGTCACTTTGTCTTGCAGCCTTGGCAGGACCTGTATAAACTGGTGGTGTTGATGGGGGAGATGATCCTGTATTACAACAAAATGGAGGAGAAGCACATCCCTATTGAGAAGAACCAAATATATGCCGCTAAAGTGGAAAATAACTGGCAGCGTGTGCTCGTCAAAGGGATCCTGACCAATGGccttgtgtctgtgtatgaGCTGGACTATGGCAAGCATGAGCTGGTGAGCTGCACCAAGCTGCAGCCCTTGATAGAAGAGTTCAGACAACTTCCTTTCCAGGGGGTCACAGCACAGCTAGCCGGAGTGAAGCAGAAGCAGTGGTCAGAGGAGGCTTCCATTGTGTTCCGGAACCATGTGGAGAAGAAGCCGCTGGTGGCTCAGATCGAGGCTATCCAGGATGGGCCCCATCCCTGGGACAGGAAGGTGGTGGTCTTCCTTGTGGACACATCCCAGCAGGACACAGATGTCTGGGTGCATGACATCATGTCAGAGTTCACAGAGGAACTTACAAAAGCTGCATAGCCTTGTTCACAAAAAAAACGTCTCGGGAGAAAACCCCTCAGATATGAAGTACAGCAGGATGGTTCAGACGTTACTTATTGTTTGGTTCATGAAGTGGttctctaaaaatatatatctatagaatatatatctatatcttaAAAACGTAAATTGCTCTGACAAGCTGACTACATGTATTTTGTCACACAGCAATAATTAAGATAGTTTACAAAAGTTCAGTCTTGCAGGTTTAGCCATGTCTGGATACATTTCCTTACTTTCAGTTATGCCCTTTCAGTTAAATTTTCACTGCTTTGAGTGCTTGatttggacatttatttataatgtgttttttttttttttttttgcccttaAAATTCTTCACATTTTGAGGAATTGCTGCACCTTAAAAGATGTTTGGAGTTTACTtgacaaatatttgtatatgctTACACACAGTGGTTAAGCTTTgaataatacagttttgttttgttctattaAGTTTAATTCTCTTAGCAGTGATGAGACTGGCTGCGTTGCATTAAAACCTAGAACGAACGTATGATATGTGATGCCCAAAATTACCATCTACTTTATATACTTTTATGATGGAAGCACtgctacttttgttttgtttaagagtAATGTTTACTTAGTTCACTACCAATGtagaaatgcaatacaaataaagttcATTAAAGAA

Function

NR:

description
PREDICTED: tudor domain-containing protein 7B-like

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017734 True 4139 mRNA 0.49 18 20520218 20550836

Neighbor

gene id symbol gene type direction distance location
AMCG00017736 tmod1,LOC102782831 coding downstream 5553 20498267 ~ 20514665 (-)
AMCG00017729 NA coding downstream 37466 20458215 ~ 20482752 (-)
AMCG00017731 nfib,LOC106608626 coding downstream 111960 20393877 ~ 20408258 (-)
AMCG00017726 LOC102788851,LOC106608629 coding downstream 533603 19973418 ~ 19986615 (-)
AMCG00017727 ppp3ca coding downstream 565406 19948192 ~ 19954812 (-)
AMCG00017738 NA coding upstream 2831 20553667 ~ 20571410 (-)
AMCG00017735 mtap coding upstream 20621 20571457 ~ 20584961 (-)
AMCG00017739 mtap,LOC107595051 coding upstream 44476 20595312 ~ 20601401 (-)
AMCG00017733 NA coding upstream 52519 20603355 ~ 20616229 (-)
AMCG00017741 NA coding upstream 69570 20620406 ~ 20622105 (-)
G92714 NA non-coding downstream 104606 20415306 ~ 20415612 (-)
G92682 NA non-coding downstream 600066 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 652582 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 653801 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 902431 19613241 ~ 19617787 (-)
G92798 NA non-coding upstream 73307 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 83836 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 121229 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 125823 20676659 ~ 20734422 (-)
G92836 NA non-coding upstream 266839 20817675 ~ 20822960 (-)
AMCG00017725 NA other downstream 161593 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1100862 19412987 ~ 19419356 (-)
G92436 NA other downstream 2057042 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2730469 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3032721 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2767257 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3713843 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4395259 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4446708 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5394305 25945141 ~ 25957648 (-)

Expression


Co-expression Network