AMCG00017739 (mtap,LOC107595051)


Basic Information

Item Value
gene id AMCG00017739
gene name mtap,LOC107595051
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20595312 ~ 20601401 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017739
TCTGTCGTCACTGTGACAGGGCTGTGCGcgcagtgtgtccagtgtgtccattgtgtccagtgtgtccattgtgtccagtgtgtccagtgtgggcAATGGCTGTGCGCTGATGCTTGAGCTTTTCTGTTGGTTTCATTGtgctcacacacccacaccacaCTGAGTAACAGTGCCTGTGCCAACTCCGCGTCTCCAGCCGCGGCAGCTCAGTTTCCGCCGGGCGCGCAGGAAGTCCAGTGTCATTGCTCTGAAGACATGGCTGCAGGCGTGCAGGTTAAGATTGGGATTATCGGAGGGTCTGGTCTTGATGATCCGGATATCTTGGAGGGAAGGAGTGagaagtatgtggacaccccatATGGAAAGcctTCAGATGCCCTCATAGTGGGGAAGATAAAAAATGTGGATTGTGTACTCCTTGCAAGGCATGGCAGGCAGCACACGATTATGCCAACAAATGTCAACTACCAAGCGAACATCTGGGCACTGAAGGAGGAGGGCTGCACCCACCTGGTGGTAACCACAGCGTGCGGCTCGCTTAGAGAGGAGATCCAGCCAGGAGACATCGTCATTATTGACCAGTTCATTGATCGGTAG

Function

symbol description
mtap Predicted to enable S-methyl-5-thioadenosine phosphorylase activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to act upstream of or within purine ribonucleoside salvage. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in biliary tract benign neoplasm and diaphyseal medullary stenosis with malignant fibrous histiocytoma. Orthologous to human MTAP (methylthioadenosine phosphorylase).

NR:

description
S-methyl-5'-thioadenosine phosphorylase

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0006166 purine ribonucleoside salvage biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017061 S-methyl-5-thioadenosine phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00772 mtaP, MTAP; 5'-methylthioadenosine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017739 True 597 mRNA 0.54 4 20595312 20601401

Neighbor

gene id symbol gene type direction distance location
AMCG00017735 mtap coding downstream 10351 20571457 ~ 20584961 (-)
AMCG00017738 NA coding downstream 23902 20553667 ~ 20571410 (-)
AMCG00017734 LOC103364796,LOC106608959 coding downstream 44476 20520218 ~ 20550836 (-)
AMCG00017736 tmod1,LOC102782831 coding downstream 80647 20498267 ~ 20514665 (-)
AMCG00017729 NA coding downstream 112560 20458215 ~ 20482752 (-)
AMCG00017733 NA coding upstream 1954 20603355 ~ 20616229 (-)
AMCG00017741 NA coding upstream 19005 20620406 ~ 20622105 (-)
AMCG00017737 ndufb6 coding upstream 24683 20626084 ~ 20627983 (-)
AMCG00017749 LOC107702147,LOC107737977 coding upstream 51744 20653145 ~ 20667672 (-)
AMCG00017748 NA coding upstream 88820 20690221 ~ 20741395 (-)
G92714 NA non-coding downstream 179700 20415306 ~ 20415612 (-)
G92682 NA non-coding downstream 675160 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 727676 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 728895 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 977525 19613241 ~ 19617787 (-)
G92798 NA non-coding upstream 22742 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 33271 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 70664 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 75258 20676659 ~ 20734422 (-)
G92836 NA non-coding upstream 216274 20817675 ~ 20822960 (-)
AMCG00017725 NA other downstream 236687 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1175956 19412987 ~ 19419356 (-)
G92436 NA other downstream 2132136 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2805563 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3107815 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2716692 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3663278 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4344694 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4396143 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5343740 25945141 ~ 25957648 (-)

Expression


Co-expression Network