AMCG00017741


Basic Information

Item Value
gene id AMCG00017741
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20620406 ~ 20622105 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017741
ATGAAACTCAGGATGCGCAAAAAGGTTTCACCCGAGGAAGGCAAGGTCTCCCAGACTGTCTCTGCAGAAGCCTCTCCCGATTCCAAATGCCCCATTTGCCTGGATAGATTCAACAACGAAGCCAAACTAGACCGCTGCTTGCACAAGTTCTGCTTTCGGTGCATACACGAATGGTCCAAAAACAAAGCTGAGTGTCCACTATGCAAACAACCTTTCAACTCCATCTTCCACAGCTATAATGCAAAAAATGACTTTAAGAAGTTCACCTTGCGGCCAACTGAAAATGGCTCTTTTGGCTTTCCTGAGGGGGAGAGGTTCAGGTACCGCACCACCTTGGCAAGAGATCGCAGGCAGATCAATTCCATGAGAAGGACGTCCCCACCACCAGACAATGGGATCATGTTTGAGGGCCTGACAGGTTCTGGCCCGGCTCAGCATGACAGAGGACTTCACCCCATGATACTCAGGTTCAACGCAAGGAGAAGAGCTCAGAATGAGGGCAGGTCATTCCGTCACATGCGGGAGAGAGAGATCATTAATTTCAGACGGGCGCTGTACCGCAGCGGGGTGCGGGTGCGAAGTGTGCGTGATGGCGGCCGCTATCGGGACATCTCTGCCGAATTCTTCCAGAGAAATCCAGCTTGTCTCCACCGGCTCGTGCCCTGGCTGAAACGGGAGCTGACTGTGCTCTATGGCAGTCACGGGTCGCTTGTGAACATTGTGCAGCACATCATCATGACCCGCATCACCAGGTACGACATGGAGGACCAGGCCATCCAGGACGAGCTACGTCCATTCCTGCTGACTCGCACTGACCACTTCCTCCACGAGTTCATCAGCTTCGCCCGGGCCCCTTACAATATGGAAGCTTATGACCAGCACGCCATCTACGACTGCCCAGCGCCGTCCTACGAAGAGGGAAGCAGCTCGGGCTCATCCGTCATCACCATCTCGGCAGATGAGGCCGATTCCGCAGAGCTGGACCAACGCCCTCTCTCTGTAGCAGGCAGCGGCTTGAGCCAGACACCATGGGATGATGAAACACCTGGCCCCTCTTACTCCACAGTGGAACAAGTGCAGCCCCCCTCACTGACCGTCAGTGAGTCTGAGTCTGAGAGCagcagggaggaggaggtgggccCCGGGCCTTCTTTGCAACAGAGTGCTCAAGTGAAGATGGACCCATCGGCAAATGAAGGTGCAGGAGCCTCATCTAGTGAGGAGGATTGCTTAATTGTGGGCTATGTCAAACCAATGGCTGAAAGGACACCTGAACTCGTCCAGTTGTCTTCAGACTCTGAAGAAGAGTCTATccacaatgaaaacacagaggTCCCTAAACAGCCTGCACATATTCGATTCCCTAGCATGAGTCCACCTTCTTCTGTATGCTCCTCAGTGTCAAAAACAAAGTCCCCACAAAGGCACCACCAGTCCAGAAACCAAtctgagggaaaagacagggaCCAGACTGCTTTTGAAGAGAAGAGGATACCACTGGCGTCACAGATCAAGAGAGAGATCGAGGTCCAGGAGCAAAGAAAGGTCCCACCAAAGGAGCAGAAGAAGATCAAGGAGTACTGA

Function

GO:

id name namespace
GO:0010842 retina layer formation biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10631 TOPORS; E3 ubiquitin-protein ligase Topors

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017741 True 1584 mRNA 0.53 2 20620406 20622105

Neighbor

gene id symbol gene type direction distance location
AMCG00017733 NA coding downstream 4177 20603355 ~ 20616229 (-)
AMCG00017739 mtap,LOC107595051 coding downstream 19005 20595312 ~ 20601401 (-)
AMCG00017735 mtap coding downstream 35445 20571457 ~ 20584961 (-)
AMCG00017738 NA coding downstream 48996 20553667 ~ 20571410 (-)
AMCG00017734 LOC103364796,LOC106608959 coding downstream 69570 20520218 ~ 20550836 (-)
AMCG00017737 ndufb6 coding upstream 3979 20626084 ~ 20627983 (-)
AMCG00017749 LOC107702147,LOC107737977 coding upstream 31040 20653145 ~ 20667672 (-)
AMCG00017748 NA coding upstream 68116 20690221 ~ 20741395 (-)
AMCG00017751 NA coding upstream 126050 20748155 ~ 20774424 (-)
AMCG00017752 LOC107591574,LOC106602091,LOC107750449,LOC101068444 coding upstream 259388 20881493 ~ 20913956 (-)
G92714 NA non-coding downstream 204794 20415306 ~ 20415612 (-)
G92682 NA non-coding downstream 700254 19905992 ~ 19920152 (-)
G92660 NA non-coding downstream 752770 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 753989 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 1002619 19613241 ~ 19617787 (-)
G92798 NA non-coding upstream 2038 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 12567 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 49960 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 54554 20676659 ~ 20734422 (-)
G92836 NA non-coding upstream 195570 20817675 ~ 20822960 (-)
AMCG00017725 NA other downstream 261781 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1201050 19412987 ~ 19419356 (-)
G92436 NA other downstream 2157230 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2830657 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3132909 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 2695988 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 3642574 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 4323990 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 4375439 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 5323036 25945141 ~ 25957648 (-)

Expression


Co-expression Network