AMCG00017747


Basic Information

Item Value
gene id AMCG00017747
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20799595 ~ 20822048 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017747
CTTGGCACAGCCTGAAACAAGAAGCCTGAACTCTCATTAGAGCGATCTCAAACCAAGACAACACCATGAACTGCAAGATCACAGTAACTGTTCTCATTCTCTGCCTGGCCTTTGCCACTCTCTCTGAAGGGATGTCTGGGAAGAGTCTGGGAACAGAGCTGCGCTGTCAGTGCATCAAGACGGAGAGTCGCTTCATCCCCCCAAAAATGATTGGGAATGTGGAACTCTTTCCCAGTGGACCTCACTGCAAGGATGTTGAAGTCATTGCTACTCTGAAGACAGGCCAGAAAATCTGCTTGAACCCAACTTCTCCATGGGTCAAGATTATGATTGATGCTATCATGCAAAAGAGCTGCTGTGCTGAACGGTGGCAGATTCAAACTCAGCTGAGCCAGAAACAAGAAGCCTGATCTCCCAACACAGCAATCTCCAACCAAGACAACATCATGAGCTGCAAGATCACAGTCACTGTTCTCGTTCTCTGCCTGGCCTTTGCTACTCTCTCTGAAGGGATGTCTGTGAAGAGCCTGGGAACAGAGCTGCGCTGTCAGTGCATCAAAAAGGAGAGTCGCTTCATCCACCCAAGACTTATCAAGAATGTGGAGCTCTTTCCCAGTGGACCTCACTGCAAGGATGCTGAAGTCATTGCAACTTTGAACACGGGCAACAAAATCTGCTTAGAACCAACAGCTCcttgggtcaaaattttgatcaATGCAATCTTGAAAAActtGTAATCCTGAAGACCGAAGTAAGAATGTTGTGAAGGAAACTACAAGATCACATTCaaatgatttgtttatgtaAGACACAGCTGGTCTGTGTCAGGCGCTCTCTCAATTTAACGCTTAGAATCTGAGCCAGTCTGCCTCTTATTCTGAAGATAACAGTGACCACTATTGTTTGATGTCTGTATCAGAAACTAATCAAGgctgatgtgtttatttttaatgaaaatgcaattaagtTTATAAACAATGATAATTGACTGgttcaaatgtgtttataaatctaagtgttaaatatatatgtgcatattttttaaggtattgtgaactttctttaaaattgtaaacagtggtatttattgaaatatttattgtattatttatgatttattattatgtgaaggatattgtttctgctgttttatatggaaaaatattatatttattgtttctttttctgaataaaaaacaaataatcaaaa
>TU115788
CATATTTGGAAAGGTTAAGCTTGAGATTATGTGAGTACATCCAAAAGGAGAAAGCAAAGATGCATTAAAAGCTGCTGATTTTGGGGAGAAGCAGCATACTCAAACTTGGCACAGCCTGAAACAAGAAGCCTGAACTCTCATTAGAGCGATCTCAAACCAAGACAACACCATGAACTGCAAGATCACAGTAACTGTTCTCATTCTCTGCCTGGCCTTTGCCACTCTCTCTGAAGGGATGTCTGGGAAGAGTCTGGGAACAGAGCTGCGCTGTCAGTGCATCAAGACGGAGAGTCGCTTCATCCCCCCAAAAATGATTGGGAATGTGGAACTCTTTCCCAGTGGACCTCACTGCAAGGATGTTGAAGTCATTGCTACTCTGAAGACAGGCCAGAAAATCTGCTTGAACCCAACTTCTCCATGGGTCAAGATTATGATTGATGCTATCATGCAAAAcaaaaAGCCTTGAAGTCAAAGATGAAGAATTGTGCAGAGGAGGAAATCTCTTTGatcaacaaacaagaaaaatatgattaatagttttataatgtaatttatgtaactCTCAAATTGTGATACATCAAACATCTGttgacatttaatttcactACTTGAATGTTCCCCCGACAACGTCAACGAGAGGCAGTCAGCACTATATATtgtttgattagatttttttaatttaaataacatgccagtgtacttttctgctttatttaagAAGGATGTTTAagtgtgtgtgaatatttaatatttaagtattatttctCTGGTGACTTGCTGAAAGATTCACATTTTGTATAAATTGacctatttcatttttttatttatgtatttatttgtatttatttttctaccacTGAAtgaagaatatttatttttgaaaagtgtttaatttgtttaagtgTTTAAGAATGtgttc
>TU115792
ACTCAGCTGAGCCAGAAACAAGAAGCCTGATCTCCCAACACAGCAATCTCCAACCAAGACAACATCATGAGCTGCAAGATCACAGTCACTGTTCTCGTTCTCTGCCTGGCCTTTGCTACTCTCTCTGAAGGGATGTCTGTGAAGAGCCTGGGAACAGAGCTGCGCTGTCAGTGCATCAAAAAGGAGAGTCGCTTCATCCACCCAAGACTTATCAAGAATGTGGAGCTCTTTCCCAGTGGACCTCACTGCAAGGATGCTGAAGTCATTGCAACTTTGAACACGGGCAACAAAATCTGCTTAGAACCAACAGCTCcttgggtcaaaattttgatcaATGCAATCTTGAAAAActtGTAATCCTGAAGACCGAAGTAAGAATGTTGTGAAGGAAACTACAAGATCACATTCaaatgatttgtttatgtaAGACACAGCTGGTCTGTGTCAGGCGCTCTCTCAATTTAACGCTTAGAATCTGAGCCAGTCTGCCTCTTATTCTGAAGATAACAGTGACCACTATTGTTTGATGTCTGTATCAGAAACTAATCAAGgctgatgtgtttatttttaatgaaaatgcaattaagtTTATAAACAATGATAATTGACTGgttcaaatgtgtttataaatctaagtgttaaatatatatgtgcatattttttaaggtattgtgaactttctttaaaattgtaaacagtggtatttattgaaatatttattgtattatt

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG:

id description
K10030 IL8, CXCL8; interleukin 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017747 True 1210 mRNA 0.40 7 20813669 20822048
TU115788 False 919 TUCP 0.36 5 20799595 20815546
TU115792 False 729 TUCP 0.38 4 20820511 20821947

Neighbor

gene id symbol gene type direction distance location
AMCG00017750 NA coding upstream 8356 20770093 ~ 20791239 (+)
AMCG00017742 NA coding upstream 109348 20680752 ~ 20690247 (+)
AMCG00017743 NA coding upstream 122181 20669341 ~ 20677414 (+)
AMCG00017744 NA coding upstream 150584 20648430 ~ 20649011 (+)
AMCG00017740 NA coding upstream 226140 20571415 ~ 20573455 (+)
AMCG00017746 smc2,LOC107656012,LOC107551560,LOC106598470,LOC106598457 coding downstream 47807 20869855 ~ 20881281 (+)
AMCG00017754 NA coding downstream 104977 20927025 ~ 20929610 (+)
AMCG00017756 LOC108411727,LOC106532529,LOC108241538 coding downstream 130277 20952325 ~ 20965101 (+)
AMCG00017755 NA coding downstream 185119 21007167 ~ 21041892 (+)
AMCG00017761 NA coding downstream 1334753 22156801 ~ 22254084 (+)
G92829 NA non-coding upstream 8744 20790574 ~ 20790851 (+)
G92819 LOC106577813,LOC107691980,LOC107742267 non-coding upstream 42152 20757206 ~ 20757443 (+)
G92794 NA non-coding upstream 171515 20626341 ~ 20628080 (+)
G92745 NA non-coding upstream 252672 20494781 ~ 20546923 (+)
G92728 NA non-coding upstream 335966 20459975 ~ 20463629 (+)
G92845 NA non-coding downstream 14882 20836930 ~ 20867397 (+)
G92849 NA non-coding downstream 61889 20883937 ~ 20885268 (+)
G92878 NA non-coding downstream 306652 21128700 ~ 21128980 (+)
G92952 NA non-coding downstream 1330273 22152321 ~ 22152580 (+)
G92954 LOC101154678 non-coding downstream 1398476 22220524 ~ 22220779 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 796466 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 1271302 19444172 ~ 19528293 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other upstream 1366492 19396028 ~ 19433103 (+)
G92538 NA other upstream 1725933 19073238 ~ 19073662 (+)
AMCG00017674 rnf103,LOC107722440 other upstream 3075645 17698923 ~ 17723950 (+)
AMCG00017745 NA other downstream 26308 20848356 ~ 20850617 (+)
AMCG00017783 NA other downstream 2479567 23301615 ~ 23329569 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 3286512 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 3883222 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 4228261 25050309 ~ 25052374 (+)

Expression


Co-expression Network