AMCG00017757 (ptprd,LOC103370113)


Basic Information

Item Value
gene id AMCG00017757
gene name ptprd,LOC103370113
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 21399301 ~ 21403260 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017757
CCACCAAAGTTTTTAAGAACTCCCAATGACCAGACGGGAGTGCAAGGAGGAGTAGCATCATTTATTTGCCAAGCCACTGGAGACCCCAGGCCTAAGATTGTTTGGAACAAGAAGGGGAAGAAAGTCAGCAACCAGAGATTTGAGGTGATTGAGTTTGATGATGGATCTGGGTCTGTTCTAAGAATTCAGCCCCTGCGCACCCCGCGGGATGAAGCTATATATGAATGTGTTGCCTCCAACAGTGTTGGAGAGACAAGTGCTTCCACCAGACTCACTGTTTTACGT

Function

symbol description
ptprd Predicted to enable cell adhesion molecule binding activity; protein tyrosine phosphatase activity; and signaling receptor binding activity. Involved in regulation of presynapse assembly; synaptic membrane adhesion; and trans-synaptic signaling by trans-synaptic complex. Located in extracellular exosome. Is active in glutamatergic synapse.

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase delta-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017757 True 285 mRNA 0.48 2 21399301 21403260

Neighbor

gene id symbol gene type direction distance location
AMCG00017758 ptprd,LOC106577623 coding downstream 29812 21316467 ~ 21369489 (-)
AMCG00017759 NA coding downstream 95178 21296047 ~ 21304123 (-)
AMCG00017753 NA coding downstream 262741 21129357 ~ 21136560 (-)
AMCG00017752 LOC107591574,LOC106602091,LOC107750449,LOC101068444 coding downstream 485345 20881493 ~ 20913956 (-)
AMCG00017751 NA coding downstream 624877 20748155 ~ 20774424 (-)
AMCG00017763 NA coding upstream 905989 22309249 ~ 22366047 (-)
AMCG00017776 NA coding upstream 1766313 23169573 ~ 23194544 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding upstream 1860774 23264034 ~ 23279042 (-)
AMCG00017782 aco1 coding upstream 1893428 23296688 ~ 23313459 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 1927684 23330944 ~ 23345917 (-)
G92892 NA non-coding downstream 270302 21128471 ~ 21128999 (-)
G92836 NA non-coding downstream 576341 20817675 ~ 20822960 (-)
G92838 NA non-coding downstream 577306 20820466 ~ 20821995 (-)
G92823 NA non-coding downstream 664879 20676659 ~ 20734422 (-)
G92822 NA non-coding downstream 723023 20672065 ~ 20676278 (-)
G92943 NA non-coding upstream 570724 21973984 ~ 21974289 (-)
G92947 NA non-coding upstream 641720 22044980 ~ 22124742 (-)
G92948 LOC107575789 non-coding upstream 689705 22092965 ~ 22093405 (-)
G92953 NA non-coding upstream 749112 22152372 ~ 22152578 (-)
G92955 LOC101154678 non-coding upstream 817261 22220521 ~ 22220780 (-)
AMCG00017725 NA other downstream 1040676 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 1979945 19412987 ~ 19419356 (-)
G92436 NA other downstream 2936125 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 3609552 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 3911804 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 1914833 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 2861419 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 3542835 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 3594284 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 4541881 25945141 ~ 25957648 (-)

Expression


Co-expression Network