AMCG00017760


Basic Information

Item Value
gene id AMCG00017760
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22257375 ~ 22263518 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017760
ATGTGGAGCTGCGGGTTCCTGGTGACCCTGTGCGCGGTGCTGGTGCGCTGCCAGTTCCCCAGAGAGTGTGTGAGCCCGGCCGGCCTCCGCAGTGGGGAGTGCTGTCCGTCTCCCAGTGGGGACCCCAGTAACATCTGCGGCTCCAGCACCGGCCGGGGACAGTGTGTGTCCATCAGTGTAGACAGACGGCCCCACGGCCCGCAGTACCCGCACGACGGACAGGATGACCGGGAGCGCTGGCCCCTCACCTTCTTCAACCGGACGTGCCGGTGCAATGGCAACTTCTCCGGCTACAACTGTGGACGGTGCCGGCATGGCTTTACTGGGGTGAACTGCGACCAGCGGACGGCTGTGGTCAGGAGAAATATAATGGAAATGAGTGCAGACCAGAAACGATTTTTTGTGAATGCATTAGACCAAGCCAAACGCACAATTCACCCAGACATCGTTATTGCAACCAGACGTTATCAGGAGGTCTTTGGACCTGATGGCAACACTATGCAGTTTGAGAATATATCCATCTACAATTTCTTTGTGTGGTCACACTATTATTCTGTCAGCAAAACCTTCCTTGGACCTGGGCAGCAAAGTTTTGGAGGAGTAGATTTTTCCCATGAGGGACCTGGTTTTCTTACCTGGCACAGGTTTCACCTGATACAGCTTGAGAGGGACATGCAGGATATGCTTCAAGACCCATCTTTTGCACTTCCATATTGGAACTTTGCCATTGGTGGAAACAGCTGTGATATATGTACAGATGACTTAATGGGAGCAAGAAGTACGGAGAGTAATCCTATCAGAAGAAACCCTGGTGGGAACGTTGCCAGGCCTATGGTGCAACGCCTTCCTGAACCACAGGATGTCGCTGACTGTTTAGAAGTTGGTCTGTTTGACACGCCCCCTTTCTATTCCACTTCACCAGAGAGTTTCCGCAACACAATAGAAGGTTATAATGCACCTAATGGAAGCTATGACCCAATTGTTCGCAGTTTGCACAATCTAGCTCACCTGTTCCTGAATGGTACTGGAGGTCAGACCCATTTGTCACCCAACGACCCCATATTTCTGTTGCTGCATACTTTTACTGATGCCATTTTTGATGAGTGGTTAAGAAGGCATAGCCCTGATGCAAATGCTTACCCTTTGGAAAATGCCCCAATTGGTCACAACAGGGGTTATAATATGGTCCCCTTCTGGCCTCCAGTTACCAATGTTGAGATGTTTGTACCTGCACCCGATAACCTTGGATACACATATGAGGTTCAATGGCCAAGTCGTCCTTACAGCCTTACAGAGATCATAACTATTGCTATTGTGGCAGCTCTGATTTTACTTGCTATCATCTTTGCTGCCACCACCTGTGCTGTACGTGCAAAATCATACAACCCTGGCAAAAATGAATCTCGGCAGCCCCTGCTTGGAGATCAATATCAGCGGTACTCAGAAGATCGTGAGAGAAACCATGATAAAACCCAGTCTATGGTCTAA

Function

GO: NA

KEGG:

id description
K00506 TYRP1; tyrosinase-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017760 True 1488 mRNA 0.50 7 22257375 22263518

Neighbor

gene id symbol gene type direction distance location
AMCG00017761 NA coding upstream 3291 22156801 ~ 22254084 (+)
AMCG00017755 NA coding upstream 1215483 21007167 ~ 21041892 (+)
AMCG00017756 LOC108411727,LOC106532529,LOC108241538 coding upstream 1292274 20952325 ~ 20965101 (+)
AMCG00017754 NA coding upstream 1327765 20927025 ~ 20929610 (+)
AMCG00017746 smc2,LOC107656012,LOC107551560,LOC106598470,LOC106598457 coding upstream 1376094 20869855 ~ 20881281 (+)
AMCG00017762 NA coding downstream 5753 22269271 ~ 22273356 (+)
AMCG00017767 NA coding downstream 298493 22562011 ~ 22562961 (+)
AMCG00017764 NA coding downstream 327275 22590793 ~ 22593980 (+)
AMCG00017769 NA coding downstream 332529 22596047 ~ 22596337 (+)
AMCG00017768 NA coding downstream 352404 22615922 ~ 22640911 (+)
G92956 NA non-coding upstream 25483 22231457 ~ 22231892 (+)
G92954 LOC101154678 non-coding upstream 36596 22220524 ~ 22220779 (+)
G92952 NA non-coding upstream 104795 22152321 ~ 22152580 (+)
G92878 NA non-coding upstream 1128395 21128700 ~ 21128980 (+)
G92849 NA non-coding upstream 1372107 20883937 ~ 20885268 (+)
G93027 NA non-coding downstream 514210 22777728 ~ 22778103 (+)
G93039 NA non-coding downstream 614560 22878078 ~ 22878468 (+)
G93100 cj011,LOC106577738 non-coding downstream 1056933 23320451 ~ 23321055 (+)
G93101 NA non-coding downstream 1066972 23330490 ~ 23330720 (+)
G93102 NA non-coding downstream 1067216 23330734 ~ 23330972 (+)
AMCG00017745 NA other upstream 1406758 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 1435327 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 2254246 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 2729082 19444172 ~ 19528293 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other upstream 2824272 19396028 ~ 19433103 (+)
AMCG00017783 NA other downstream 1038097 23301615 ~ 23329569 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 1845042 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 2441752 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 2786791 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 4729373 26992891 ~ 26997452 (+)

Expression


Co-expression Network