AMCG00017773 (LOC106577627,LOC106944166,LOC103146371)


Basic Information

Item Value
gene id AMCG00017773
gene name LOC106577627,LOC106944166,LOC103146371
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23143472 ~ 23152780 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017773
TATACTAATGCAGATGAGAGAAGTGCAGCAGAACATGGGTTACTGCCCCCAGTTTGATGCCATTGATGACCTCCTGACCGGACGGGAGCACTTGGAATTTTATGCACGTCTCCGTGGGGTTCCTGAGAATGAAGTGAAGATGGTGGCTGAGTGGGGAATCCAGAAACTGGGACTTGTCAAATACTCCAATAAGTCTGCCGGCACATACAGTGGAGGAAACAAACGCAAGCTCTCTACTGCCATGGCCCTGATTGGGTGTCCTCCTGTGATCTTCCTGgatgAACCGACAACTGGAATGGACCCTAAAGCTCGCCGCTTCCTGTGGGACTGTATTCTGAGTATAATCAAAGATGGGAGATCTGTCATCTTAACATCACATAGCATGGAAGAATGTGAAGCTTTATGTACAAGAATGGCAATCATGGTGAATGGGCAATTTAAGTGCCTTGGAAGTATTCAGCATTTAAAGAGC

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017773 True 472 mRNA 0.47 4 23143472 23152780

Neighbor

gene id symbol gene type direction distance location
AMCG00017774 NA coding upstream 14015 23101962 ~ 23129457 (+)
AMCG00017772 NA coding upstream 123009 23007023 ~ 23020463 (+)
AMCG00017766 NA coding upstream 456150 22686558 ~ 22687322 (+)
AMCG00017765 adgrl3 coding upstream 475019 22661066 ~ 22668453 (+)
AMCG00017768 NA coding upstream 502561 22615922 ~ 22640911 (+)
AMCG00017779 NA coding downstream 13567 23166347 ~ 23168345 (+)
AMCG00017778 LOC103387471 coding downstream 60631 23213411 ~ 23215360 (+)
AMCG00017775 rbpms,LOC107377421,LOC106526281,LOC107086924 coding downstream 75077 23227857 ~ 23249847 (+)
AMCG00017770 NA coding downstream 118819 23271599 ~ 23276170 (+)
AMCG00017771 NA coding downstream 126969 23279749 ~ 23289355 (+)
G93039 NA non-coding upstream 265004 22878078 ~ 22878468 (+)
G93027 NA non-coding upstream 365369 22777728 ~ 22778103 (+)
G92956 NA non-coding upstream 911580 22231457 ~ 22231892 (+)
G92954 LOC101154678 non-coding upstream 922693 22220524 ~ 22220779 (+)
G92952 NA non-coding upstream 990892 22152321 ~ 22152580 (+)
G93100 cj011,LOC106577738 non-coding downstream 167671 23320451 ~ 23321055 (+)
G93101 NA non-coding downstream 177710 23330490 ~ 23330720 (+)
G93102 NA non-coding downstream 177954 23330734 ~ 23330972 (+)
G93125 NA non-coding downstream 274952 23427732 ~ 23429155 (+)
G93131 NA non-coding downstream 288629 23441409 ~ 23441770 (+)
AMCG00017745 NA other upstream 2292855 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 2321424 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3140343 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 3615179 19444172 ~ 19528293 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other upstream 3710369 19396028 ~ 19433103 (+)
AMCG00017783 NA other downstream 148835 23301615 ~ 23329569 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 955780 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 1552490 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1897529 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3840111 26992891 ~ 26997452 (+)

Expression


Co-expression Network