AMCG00017776


Basic Information

Item Value
gene id AMCG00017776
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23169573 ~ 23194544 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017776
agGTGCATCCATCCTCGACTGTTCTTGAACTTAAAAATAGGTTTCATAAAGCATGTCCCCAGTGGTATCCTTCCCGAACTGGCCTCAGGGTTGAACGCAATGGGCTTTTCCTCAGAGATTCATGTGTTATCCAGACCATTGCTTCATCATCTCTTGTTACGTTATACTCCACAGACTTGGGCCGGCAGGTCAGCTGGAGTGCAGTATTTCTAACCCAGTATTTTGGACCTCTCTTAATCTACCTGATGTTTTATTTCCGATTATCAAGTATATATGATGACACTATTGAGAACCATCGCCACCTGGTAGTGCACTTGGCATGCTTCTGCCACTCCCTCCACTATGCCAAACACCTCCTGGAGACACTCTTTGTTCACAAATTCTCAGAAGGATACACCCCTTTACAGAACCTGTTGAAGGGTTGCACCTTCTACTGGGGATTCACAACCTGGCTGGGTTATTATGTAAATCACCCTCTGTATACACCTCCATGTAGttttgtgAAGCTGGAAATTGTTGTATCAACTTTGCTTTTGCCCAACACAATCAGTCCGGAAACAGATCACATTTTCCAGGACCTACCTACAATCCCTTTACATGGCTCTTCAAGCTGGTCTACTGTCCCCATTATACATATGAGATTGGAGCTTGGATTAGTTTATCCATTATGACTCAAACTGTTCCTGttgcaGTGTTTGGTGTGATGGTAACCATTCAGATGTTACTGTGGGCGAAGAAGAAACATCATAAGTACCTGAAACTGATGAAGAACAGCGCATATCAGAGGGCGGCTGTAGTTCCTTTCATATTGTAGACACTGGTGCCCGGGCAGTGTCATGATGTAATAACAGGAAATAATGCATGAGCAGGCTGAAAACAGAAGCATAGGCTGTAATTCAAAATGCATAGCATTTTAATCATCTGATTTTATTCCGATAAAGAGCACACAAGTATAGCGCTAGGAATTAAAATGATGCAGGTTTTGAACTTTAGAGGTTACACTGATAGCTGTTGACAAGGCATTAGGACAAATCTAGGTAAACTGGCAGTAAACTAGTGAGTCAGTGCCTCTGGAAGAGTGTGAGAGATAGAGGATCCACATTGGGCTTGAAAAATGAGACTCccgaaacatttgttttcctcttcccTGTTTCAAGAGGTGCATGTGGAAATAAACTACCTGATGTACAGCACTCTAATGCTGTCATTCAAATAAATGGTTAatcaaaaaaacagcaaaaaaacaatgtgGGCATGAGTTTCAGGTATTGTTGAAAGACTTTCATAACACCATATATCTTTGGCATCTAAAgttgatttcatatttaatttaattctggtTCCAGTCTAAGAAATAACATACTTAAGTTTCTACTGGGAacactactacttctactactgctactactactactacaaataaaaatcctGCAGGAGAACAGTGCACTgtttgttgtcacatgcacactaataataatatttgattttttaacTTGCAATCACATTTCACAGTAGACTGGTGATGTGAAAATACTGCATGAGTGAACAAGACACAGGCAGAAGTAAAATCTAAGACGCAAAAGAAAAGAATACCTGCCTCTGTCAAGCCCTTTCTCCTGGGAGCACTGCGGAACTGGAATGCAGCTGTACAATTTTCAACTGGACAAAAGGTGTTACTGCTGAACTAGCAAGAAGAATCAGTGAATTGTTATAGTCAAATTTTCTAATTAAAGTCATACTCACATCAAGaacttttcaaatgtttaataatctATGAGCTAAGTGCAATGTTCTCtataaatacagttaatatgTTTTTGCTATGAACAGGTTTACAGTGTCAGAATAAATATACAGCTTTGCTTGGATTaggaaacacatttgttttgcacattctTTCAGAGCCTATCAGGCCAGGACTGTTCATCTAAGCCACACAGCATGCATATATTTCTTCACATTCAGTCATGAGGGGTAGTATAGCAAAGCAATTTTGGTCATAATATAGAATGGTTAATGAGGACACATTACATTATGAAACAATTaattcaacaaaaaacaaaattgtataaTCTACTCTTATAAGGTATCTTATGAATCTGCCTGTTtcatttttgaatatatattgtaatgatgCATGCAACAGCAACACACATTAACTCTTCACCAAAGAGCTCAGACCACTGGCATGGAGGTGCCTTCAGGCTATATGCTCCTTGAACCCACTCcaag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017776 True 2232 mRNA 0.39 10 23169573 23194544

Neighbor

gene id symbol gene type direction distance location
AMCG00017763 NA coding downstream 803526 22309249 ~ 22366047 (-)
AMCG00017757 ptprd,LOC103370113 coding downstream 1766313 21399301 ~ 21403260 (-)
AMCG00017758 ptprd,LOC106577623 coding downstream 1800084 21316467 ~ 21369489 (-)
AMCG00017759 NA coding downstream 1865450 21296047 ~ 21304123 (-)
AMCG00017753 NA coding downstream 2033013 21129357 ~ 21136560 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding upstream 69490 23264034 ~ 23279042 (-)
AMCG00017782 aco1 coding upstream 102144 23296688 ~ 23313459 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 136400 23330944 ~ 23345917 (-)
AMCG00017787 NA coding upstream 161062 23355606 ~ 23388495 (-)
AMCG00017789 NA coding upstream 217117 23411661 ~ 23422126 (-)
G93038 NA non-coding downstream 330139 22839151 ~ 22839434 (-)
G93033 NA non-coding downstream 365189 22801371 ~ 22804384 (-)
G93028 NA non-coding downstream 391474 22777804 ~ 22778099 (-)
G93026 NA non-coding downstream 478041 22690675 ~ 22691532 (-)
G93024 NA non-coding downstream 479896 22686424 ~ 22689677 (-)
G93090 NA non-coding upstream 95788 23290332 ~ 23290681 (-)
G93092 NA non-coding upstream 100275 23294819 ~ 23295369 (-)
G93159 NA non-coding upstream 101256 23295800 ~ 23296246 (-)
G93165 NA non-coding upstream 131981 23326525 ~ 23329744 (-)
G93173 NA non-coding upstream 249667 23444211 ~ 23540120 (-)
AMCG00017725 NA other downstream 2810948 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3750217 19412987 ~ 19419356 (-)
G92436 NA other downstream 4706397 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5379824 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 5682076 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 123549 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 1070135 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1751551 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1803000 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2750597 25945141 ~ 25957648 (-)

Expression


Co-expression Network