AMCG00017781 (acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953)


Basic Information

Item Value
gene id AMCG00017781
gene name acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23330944 ~ 23345917 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017781
ATGTTGCTCCACTCGCACTGTTCTCGCCGGAGCGGCCAGCGAGGAGACGACCTGACACAACAGAGCAAGCCCGAAGTGGAGGGTGTGCGCCGTGCACAGCTGACATCCTTGGCTGAGCACTTGCTCGGCGCGGACGGGACGGAGACCATGAGCCACCTCAAACTGTGGAACCAGATGCAGGCGGGCAGCTCGGAGGTGGACTGGTGTGAGGGCAACTATCTCATTTACCCTGGCATTGCGGAGTTTTACAACACGATCAGcaacatattgttttttattttgccaccTATTTTAATGTGCTTGTTCCGTCAGTATGCCACACATTTCAACAGTGGGATATATCTAATATGGACTCTGCTGGTTGTAGTTGGTATCGGCTCAGTGTACTTCCATGCTACGTTGAGCTTTCTGGGGCAGATGCTGGATGAGCTGGCTATCTTGTGGGTTTTGATGTGTGCCATCGGCATGTGGTTCCCCAAGAGATACTTGCCAAAGATTTTCCGGAGAGACAGGGGGAGGTTCAAAGTCGTCATTGCCATTCTCTCTGGAGTCACTACCTGCCTTGCCTTTGTCAAGCCAGCGATTAACTCAATCTCTCTGATGACCCTTGGTATTCCATGCACTGCGCTGCTCATCACCGAGCTGAAGAGGTGTGAGAACCTGCGGGTGTTTAAGCTGGGGCTTTTGTCAGGGCTCTGGTGGACTTTAGCTCTCCTCTGCTGGATCAGCGACAGGATCTTCTGCGAGATGTGGTCCTCTTTCAACTTCCCATATTTACACTGTGCATGgcACATCCTGATCTGCTTGGCCTCTTACCTGGGCTGTGTCTGCTTTGCCTACTTTGACGCGGCCACGGAGGCTCCAGAACAGGGACCTGTCATCAGATTCTGGCCCAGTGAGAAATGGGCCTTCATTGGGGTGCCGTATGTCAGCCTGCTCTGTGCACACAAGAAGTCATCAGTGAAGGTGACATAACTGAACTACTGTGGTGCTGTGGGAGAGCGGATCACTCTGGAGCAGGGAGACGGAAGATgaagaatttatatttttatattctacAGTTTGCACAGTTACAGATTGTAGGTTGATGATCAAAAAATGTACCGGTATAAAGCTGGTGTATAGATAAATTCTTTATGAACACAGTTTGTAAAGGCTGCTTTTGTTTATGAGAAGAGGTCCTTATACTTGGGTATATATAACTTCACCAGTGAAGAATTTGCTCCCCTGTTGACATATGTGGGACCAAGGTGTGACAAATGGAGTGTAACTCTCTGTACTATACATTAGGCTCTTCCCTACCCTGCTGCAGCATAATGTAGCTTCTGTGTCCAAGTAGAATTCCTCTTGGTGGTGTTACTGGAATCCACTGTCTTTACAAACTGTTTTGCAAGTCCTTCAAATTTTTGCTGCAAagtttaacactttaaaaaatatatatttgtgtgataCCAATAGCCACACCCAGGACCTGTGCCTTGACTAACTTATTATGAAATTCCGTTACTGACATTTGATCCAAATGTTACTGTTACGTTAACAAAGGtataatttctatttttgtgaACATTCCATAGCATTCATGATATTGAGTcttccaaataaacaaactggcAAATTTTAAAGGGGAAAGTATTATATTGTCCCCTCatgaagttttatttatttgtggaaatGTTAAGATATGTCAATCATTATTAAGCTTTTGTTCTTTTGTCCATctcttacattttgtaataccTGCTTTCATATGGAAGCCTAACCAAGAGTGAGTGATTCATCATTGCATTCTGTAGCACATATTGGTCCTCAAACTGATAATAATCATTGGTAAAGTTATTGGACCCACTGTGTATTTTGTGAAAGAAATAATCTTGTAGCACTGTGACCTCTTTAACGGTaatctatataaaatattgtaatttattccaagattctgcatttttatgttttgtaacatATGCCTGGCTTTGGGTGGTGTGGTACACTCTGGATCATGTAGTTATACTGGAGTCATTGTTAGGTTCCAATGATTTTTGTGCTAAAAAAGATGTAGTTTTGGGTAACAAGTCACCACATACTTCAAGACAATAGCTGTCATATGTGGATACAAATTTATGCAAGCTTGCAGTGTCTGACAGCGTTCAAAAATAGTAATTTTGTATATCCccacaattttttatttgttacagGTCTAAATTCTACAGTGGGTTGTGGAGGCCATGGCCAATTTTTTTAAAACtatctaaaatgtaattatctcaTGATTACAGCATTATTTATCTGGTGCTCACAAAACATATCTCAGGTTCTTCATCAAATCATTACTTTGTGAACAACTgataacagaataataatatcAAGATCCTCGGATAACAATGTTGTGATCATGAGATAACAATGATCTTTTTAATAATCTTGCCATGAATTCTTGAGATATGAATACCTCCCACCACTGGCTTCACAAAACATTGAGAATTCAGCCTATAATGCATGATTAAATCTGCCACttgtacttattttattgtaactgTGTATTAGGTgagaactaaaaacaaaaaaatattatatctactttaaaaaatgcaatgttaatAATCCATTGACTTAAATGTTCCCAGAGATACATCCCCTGCAGTTCTATCAAGAAGAAAGATCTGAGGTGGTGTATGCAGTAATCTAAGTCAGTGTGATTAAGAAATGTGTAAAGATTgcactaaatgtatttattttcctaatctcatcatatacagtatttgtagCAGATTTGTagaaaaaccaaacaagaaagaaacacattataACAAAGGTAGGAAGTATCTCTTGtacttgtatttttacattttatcttaTGGGAAAACCTGGCCAATAAACCTTTTTTGGTGACGTTGTCTTCACTTTAACAATGTTTCTCAACAGTCAgtagatatgtttttaattatacagaTGACTGTGCTTGCTGCTTTTACTAAAGTTTTGTGTGCGCAGCCCCTGTCAGAATCAATAAGATAACTATGTGATTCATTCCTGGTGATGAAGTGAATCACAAACAGTCCAATGCAAGGTGTGGATTTGCAATGTTGTGATGATGTCAGACAAACAGATGATCAAACTGGCAACCAACTTCGGCAAAgcaacagtaaaaacattaataaatgcatgtacagcacataaaaatataaccaactaaatttaaaatgcattcaaagttCACTAGATTATCCCAAAAAGGTATTATGTGAGACTTGGTAGGCATTCTTGATTCTCAAACTTGATAACCAAATAGAATATAATGAATTTGTCACAGGAAGGAGTAGAGAAATGTGATCTATGATAGTATAGATTTTAGGAGACATGTTATCCAGCAAGCTGCAGAGGTCAAGGAAATCCTGTGTGGCCCAGAACATTCCTTAGAAAACTCTCCATGCCATGACCAAAGAATCTTGTTTTCCATTATGTTCCATGACACAATCTGTCATAATAACTAAAATGTTTTCTCATGACAGTAGTCCATGTTTCTTTAACTTACAAAACACAAGATTGTTATAAAGAGGATTTTCAgacaaaagtatgtgacagAGTTTGtcctattaattttgtttatctCATGACTTGAGCTTGGGTGATTGCACTGCGCTGAGCTAATGGG

Function

symbol description
acer2 Predicted to enable chitooligosaccharide deacetylase activity and hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides. Predicted to act upstream of or within ceramide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood cell and vascular endothelium. Orthologous to human ACER2 (alkaline ceramidase 2).

NR:

description
alkaline ceramidase 2

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017781 True 3649 mRNA 0.39 7 23330944 23345917

Neighbor

gene id symbol gene type direction distance location
AMCG00017782 aco1 coding downstream 17485 23296688 ~ 23313459 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding downstream 51902 23264034 ~ 23279042 (-)
AMCG00017776 NA coding downstream 136400 23169573 ~ 23194544 (-)
AMCG00017763 NA coding downstream 964897 22309249 ~ 22366047 (-)
AMCG00017757 ptprd,LOC103370113 coding downstream 1927684 21399301 ~ 21403260 (-)
AMCG00017787 NA coding upstream 9689 23355606 ~ 23388495 (-)
AMCG00017789 NA coding upstream 65744 23411661 ~ 23422126 (-)
AMCG00017788 NA coding upstream 77774 23423691 ~ 23430213 (-)
AMCG00017790 NA coding upstream 100007 23445924 ~ 23457016 (-)
AMCG00017791 NA coding upstream 113010 23458927 ~ 23464763 (-)
G93165 NA non-coding downstream 1200 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 34698 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 35575 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 40263 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 491510 22839151 ~ 22839434 (-)
G93173 NA non-coding upstream 98294 23444211 ~ 23540120 (-)
G93324 NA non-coding upstream 561658 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 688779 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 698277 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 955503 24301420 ~ 24301980 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 8990 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 2972319 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3911588 19412987 ~ 19419356 (-)
G92436 NA other downstream 4867768 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5541195 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 918762 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1600178 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1651627 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2599224 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2666571 26012488 ~ 26015942 (-)

Expression


Co-expression Network