AMCG00017783


Basic Information

Item Value
gene id AMCG00017783
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23301615 ~ 23329569 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017783
GTATATAAGCGCCAGTGTGCGTCTACTGCGCATTTCACTCTCTACAGACGACAACCATGATATTGCAACTAGAGCCTGAAGCACCTCGCCGTTCACCTGCGAAGATGTCCGACTTTCACGCCGCGAAACAGCAGAAGATGCGCTTTTCTCTGGATCCGGAAGACGTGCGGGTTTTCTCGTTGAAGAAGCGGATTGTTATTGTGGAAAATACATCGCGGGTCAATAACCAGGCCACCCCGGACCCCCGCTGCAGCCGCGTCCAGGTCCAGACTGCCGGCTGAGACTCGCTCCACACCGCAGTAATGAGAGGTGGAGACAGAATGGCCCCTGACGCTGCCCATTGCTACTGCCCAGTCGCTTACCTGTGCCCATTGAAATACATGATGCCAAGTGTGGGTTTCAGTAAGGCCAGTGCCCCGCTTTCCCACGGGCCTGTGACACAGCGGCACCTCCCTGGGAACAAGTGCGAGACGGACCTTGCGGGACTGCCACTGTTCCAGGTGTTTTGGCGAGCCGTCTGCTTCCTTCTGGGAGCGTTTTCTAAAATGCTGAGCCACTGGCCCATTGCCACTGAGTCCGTTCGAACCAAAGTCCCCATGGCTGGGAAAgactcccccctcccccacactcCCTCTGGGATGACCAGTTTTTTAATGGGGTCCTGTGAAAAGCAGAGGAAAGACACTCCAGGGTGTGAAAATTGGCCCACTGTCCAGGAAATGCAGATGGTTAAGGTAGAGAGTCTTTGGGGACTGGTGTCAGGTGAGATGGAGGTGCAGGTGGAGATGTCTGACTGGTTCGAATGGGATTCAGAAGATCTGGAATCACATGGTGGTTGTGAAGATGCAGAGGCGGACAGTGATTTGGACTGCACCTGGGATGACCTCTTGGACTCTGCTCCCGATGCCAGTTTTTCCCTGGCTGGCAAAGACTCGGATTCATTCAAGGCGGTGAGCTGCTCCTCCAGGCAGAGACcattggaggaggaggaagaggaggaaatgGACGAGGAAGGTGAGACGGACTGGTCAGAGGACGAGGACTGGGAAGATGATTCAGAAGGGAGCTGTGAGGGaccacagagcagcacagagctCTGGGAACTGTTCCTGCACAGTGACGACCCCTACAACCCCTTTGCATTTGAGGCTCTGGCTGGAAAGGTGACGGAAACCAAGGATGAGCCTCCTGTGGACAAAGAAGGACCGGGGACTCCTCTGAGAAAGTCAGAGGAGGAGGACAGCTGCCCCCTGCAGGATGGGAAGAGAGCAGGCAAGAAGGTGCGATTCAGTGATAAAGTGGAAgtgtgccccctggtggtgTGGGGGTTTGCCAGCCATGCCGCTCGCAGTGGATCCTGCTGGCAGGAGATGGCCAGAGACCGGGACAGATTCCAGAGGAGAGTCCAGCAGACCAGTGACGTCATTAGCCTCTGTCTGCAGCCGGAGCACAGGGCCAGAGTGTGGGAAAGGATATGCCTTGATTCATACTGTGAAGACTGACATGCCATTATAAGCTTCAATCAAAacgtacagattttttttctgtactttatacTTTTCACTTTATTCATCCTTCTGTTATTAATGTTACTCATTTGCACGagtctttgtattttattatttttctaactaTTCTAATGCTGTGCAATAATACTGATTTCCAAACTCTGTGAAAAAGCactgaaatacaaattttattaaattctggaaaacaaagtaatataaGAAGGTTAAGTTTTATTTGAACTGACCAGGTACTTTTACTTGCTGGTGGATGTAAATATTTCCTATTACTCGGTATTTGTTGatgcacataaaataaatttataTTGACCAAGCACTGTTTGAAGGGTGCTTTTCATTTATAGGAAAGGTGTCTGTTAAAAGCAGTTGATACAAGTTCTAAAACTGTCAAGGATGTATACACTTCCAGTACTAAAACTGAATATCTTATTTACACAATCTAGGTACATTTTAGGAGTAACTAAACCAAACCGTTCGAGTGAAATGGGGTAAGGCATAGCGGGGAttggtactttttttttattttttataaccaaGCATTTAGTGCCAGAATCAATGTTCCCCACAATGTGCCCTAAAATGTGCCCTAAGCTGTCTTAATGCTGCAATATAATATTGTGGATTGGTTTTAATGTTCCATCAACTTTAAGGATTTGTTTATAaagttatttagttttataattgtaataaactCCCTTTAGTCATGTGAGCAATTGCTATGCTTAAATTattctgtaaatgtataaacacgGTGGAGGATTGATGCtgaggggaaagaaaatagTGGTTAGAAAAACGTATTAGTTTCTTGATATTAAAATCCTTTGAACTCTATGCTGTTCTTTAGAAGTCTATTGAAAAGACAATCCCAATAAAAAGGCATGTTGATACCTTTA
>TU116134
CCACAGCTCAAGTGAGCAGGTCTGCACTGTGGTGTacttaaatgttaaaacatcCATTCTGAACCCTACATACCTGAGTGATGGCCTCCACTACTGGCTCTGGAAGAGGGCCGCTGTTCCCGATGCAGGTCATGCAGCCATAGCCCACAACTTCAAATCTGTGGGGAGGATAAAACTACTGGTGTAGAACTAGATTAACCACCTAAGAATGTATAGCCACAAATCTGTAGTATTTAAGCCTGATTCCACTGATATAATTAGCAAGACAACAAAGTGTGGGGGTTAAACTCGGGTGAAAGCTACAAAACCCAGGAGATGTTACATTTCAAAccttttattaataatacactttAGGAATGGGGCCACTCAACTCCTAGGTCCACTTTGTATACCAAGATGTGAATTTCCACAACATATCAATGAATAAACATGGACCTGAAGAGTACATCTTTTGGATGTACAATAAACAAAGTTCAATTGACCGTGAGCTAAGTTGGCAAAACCATAGCAAGCAtactagtttttttttgtttttgttttctaaaaaggaaataaaacggGGATCTTTAATAACTGAGCCAATGatcagttcaattaagtaagtttctaaggaatgaaaaacagaaattccTGCAGCTTACAAATATCACATCTTGAGGTACCAGTAAATTGCCAACATAAGTGCACCATCTAGTGACCATGCTAAAGAACTGCCGATGGAATTGACATAACATCATGGCTTTATTTAAGCTACATTTGTGGTACGTCTGATAAAACTTCAAAGGTTGAGATCTACCAATGAACTTATGACTAGGAAGGGAACCTTTGAAAGCAGCCCTGAGGACAGGTGTCCCGCTGCTTCTGCATAATTTCCTGCAGGCTGAGCATTCATTTGAATTCTGTGTCATTACCCGAGCTGAGAGAGGTAATCCATCACTCCACTCTCCTTCAAGTAGTAGGTGACAACGCCGCTGCCAGGAGACAGGCTTGTCTTTATGTACGGCTTCATACTGAGCCCCTGTTGAACAGCTCTCTTGGCCAACAGccctggaaaaaaaatgcaacagaatGACATTAAAGAGGTGACTGATGATACAAGGAAGACTATCTTGGGGATCATTATGGAACCTGGGAACTACGCATTTAAAACAGAGGACCAAAACTGACAGCTCTAATAAAAATCTAATCTCAAAAGTGTGGGAACATACACCTGACACATTTTGTCATTTCTGGCATTCTATATGGCTAGATTGATAGGATTAGAAATGCAGTAACTGATGACCTTGATATAACTGGTTCAATATTTTGGGGCAGCAACTCTATGTCAGATTGAAACTAGACATTGCATttggtttattgatttgttttttaagaggtCTAGACAAAAGTGTGTAGACTTAAAATCTAATAAGCATTGATTTTTCAAAGGAcgggaaagaaaaataagtatttcaaatgtaaatagcCTTTAtggaacaaaaatgtattaatatcgTAATTGATGAATGAGGCTAATATTGCTCATATACCAGCATTGCCCCCTTATATTTGTAGtctgtaatatatacatttattttagatgttaaaaatgaacctccttatatataaaatataggttCGTTCCGATGTTTTGGGAGAGGCAGCGGAGGTGGCCGGGGTGGTACCTGCACCCAGCATCACGGAGGGGTTGCTGGTGTTGGTGCAGCTGGTGATGGCTGCAATTACCACGGACCCGTGTGACAGCTTGTACTCTTTGCCGTTGTACTCGAAAGAGGCTGAAACAGTCTGATGTTTGGGCGCCACCTGGAAGCCTTTAAATCCTTGCTGAAAATACAATCAGTTGTCGATTTCAGGATCTTTTGATCTCAAATGCACCTATAGGCTCTCTCTACAGCAGCACAAGTTCTAGACTTAAAAGTTTAAAGTTAGACAAAGTGTTGGAGGAAGATAATATGAAGCAGAAATAGGTCTGAGCCAAAAGAGTTCAGTGTGGGCTAAAAGGACATGACTTAGACAGGATATAAGTGGGTGTCTACAATGTCCAGTCTTGCACTCACTTCTGCAATTCTGAAAAACGGGTACATAGATGTCACAATACTGAAATTGTGATATCTGCACATTCCATAACTCAATTTAGAGTGCTAGGGTGATAAAGAGATGTTACAAAAGATCTTCCCCATTGAACAACATTTCCTCTTTATTCTACACACTAAGAACTACAGCACTAAACCTGATCAAGAGAAGATGCCTTACCTTGGCTCCTAAGCAGCTTTCAAAGTCTTTCTTCATATCTGTCACCGCTACCTTGTCCTGGGGCCGTTTGGGGCCGCTACAACAGGAAACCACAGTGCTGAGGTCGAGCTCCACTACCTGCACAGAGGAAACAGCAAAGTGCCTCACAGCCACAGAGGACACTGACAGGAGGTGTGTCAGCCAACGTGGCTCTCAAAATTGGAGCCCATCTTTGCTCCTGAAAAGCTTCTCCACGCTCATCTTTGCTCCGCAGTTACAAACGATCTTCAATAAATGGCCTCCATATGTAAACTAAGTAAAGGCAGAGAGATAGAATGCTTCCACAGGGTAGAAAAGGCAACGCTGATTTCCGTTACCTCTGTAAAGTCTGGATCCTGGGACGAGTCGTTGAAGTCCCTGAACATCCCTACTGCTTTGAGGTACTGGGTGATGTAATTCAGTTTATCTTCATCTCTCCCTAAAGTGAAAGGAAGCATTACAAAGCAGAGTGCAAGTGCAACAGTGGAGTGTCGATTATcagaaattagaaaattaaattaaatagttatTGTTACACTCCCTGTTTCAACCAACAGAGGTCACTAAAAGCTCTTTATATAAGATTGAAAGTTTCTCTGAAAAGTTGCCCCCTCCAGGCAGTTCACCCATTCTAAAGTAAGGACATCTCTAGCAACATGAAATAATAGTGAAGTAAACTCCAGTCTTGCTAGAGATCAATATGATGCAATTCAGTTGCTGGAGCCTGCAATATCTATGCAATTCGTTTTGAACACcaccatatatttattttttataaaggcAAACAGTTGATTTCAGAACTATTGCAGTCTGCAATTCCCCAGatgcttctttttgttttcttatatgGATGACTTGATGTGCATGATTTTGGAGCATGTGGGAGAGCTGCCTCCATCTATCCTAGCCTATTACAAGGATTTTCAAGGGCTATAAATAAGGCATAGGCATTCAAAAATGGCAAgtataaaagcaaataaaaaaaataaaaaatacagaagattGCATCAGGCCGGGAATGGAAGCACAGGGAATTTGTGGTCACCTGTTTGCTCCAGGTATTTGACGCTGATGTGATCGACAGGGAAGAAAGCGGCTGTGGCTCCGTACTCTGGACACATGTTGGCAATGGTGGCCCGGTCAGCGATAGAGAGCTGGGCCACACCGGGGCCAAAGAACTCCACAAACTTTCCCACCACGCCAACCTGCCTTAGGTGCTGTGGGCAGAGAGGACAGAAAATCAGAGCTCTGTGACGACCCCTACAACCCCTTTGCATTTGAGGCTCTGGCTGGAAAGGTGACGGAAACCAAGGATGAGCCTCCTGTGGACAAAGAAGGACCGGGGACTCCTCTGAGAAAGTCAGAGGAGGAGGACAGCTGCCCCCTGCAGGATGGGAAGAGAGCAGGCAAGAAGGTGCGATTCAGTGATAAAGTGGAAgtgtgccccctggtggtgTGGGGGTTTGCCAGCCATGCCGCTCGCAGTGGATCCTGCTGGCAGGAGATGGCCAGAGACCGGGACAGATTCCAGAGGAGAGTCCAGCAGACCAGTGACGTCATTAGCCTCTGTCTGCAGCCGGAGCACAGGGCCAGAGTGTGGGAAAGGATATGCCTTGATTCATACTGTGAAGACTGACATGCCATTATAAGCTTCAATCAAAacgtacagattttttttctgtactttatacTTTTCACTTTATTCATCCTTCTGTTATTAATGTTACTCATTTGCACGagtctttgtattttattatttttctaactaTTCTAATGCTGTGCAATAATACTGATTTCCAAACTCTGTGAAAAAGCactgaaatacaaattttattaaattctggaaaacaaagtaatataaGAAGGTTAAGTTTTATTTGAACTGACCAGGTACTTTTACTTGCTGGTGGATGTAAATATTTCCTATTACTCGGTATTTGTTGatgcacataaaataaatttataTTGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017783 False 2422 mRNA 0.46 3 23325654 23329569
TU116134 True 4242 lncRNA 0.42 3 23301615 23328984

Neighbor

gene id symbol gene type direction distance location
AMCG00017786 NA coding upstream 4968 23295493 ~ 23296647 (+)
AMCG00017771 NA coding upstream 12260 23279749 ~ 23289355 (+)
AMCG00017770 NA coding upstream 25445 23271599 ~ 23276170 (+)
AMCG00017775 rbpms,LOC107377421,LOC106526281,LOC107086924 coding upstream 51768 23227857 ~ 23249847 (+)
AMCG00017778 LOC103387471 coding upstream 86255 23213411 ~ 23215360 (+)
AMCG00017785 rps6,LOC106609995,LOC106602804 coding downstream 18789 23348358 ~ 23352278 (+)
AMCG00017784 NA coding downstream 110177 23439746 ~ 23443917 (+)
AMCG00017794 LOC103353869,LOC108275199,LOC100699015,LOC101470794 coding downstream 280669 23610238 ~ 23615963 (+)
AMCG00017793 NA coding downstream 298332 23627901 ~ 23632668 (+)
AMCG00017798 NA coding downstream 318639 23648208 ~ 23671667 (+)
G93039 NA non-coding upstream 423147 22878078 ~ 22878468 (+)
G93027 NA non-coding upstream 523512 22777728 ~ 22778103 (+)
G92956 NA non-coding upstream 1069723 22231457 ~ 22231892 (+)
G92954 LOC101154678 non-coding upstream 1080836 22220524 ~ 22220779 (+)
G92952 NA non-coding upstream 1149035 22152321 ~ 22152580 (+)
G93101 NA non-coding downstream 921 23330490 ~ 23330720 (+)
G93102 NA non-coding downstream 1165 23330734 ~ 23330972 (+)
G93125 NA non-coding downstream 98163 23427732 ~ 23429155 (+)
G93131 NA non-coding downstream 111840 23441409 ~ 23441770 (+)
G93207 LOC107571907,LOC107703852,LOC108427439 non-coding downstream 345681 23675250 ~ 23675551 (+)
AMCG00017745 NA other upstream 2450998 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 2479567 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3298486 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 3773322 19444172 ~ 19528293 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other upstream 3868512 19396028 ~ 19433103 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 778991 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 1375701 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1720740 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3663322 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 4143312 27472881 ~ 27697379 (+)

Expression


Co-expression Network