AMCG00017788


Basic Information

Item Value
gene id AMCG00017788
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23423691 ~ 23430213 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017788
AGCGGAGTCAGCAGTTCGCAGTCTCTTGTTGTTTTGAGGATTTTCGTTTCATTTTCTGGACTGGTAAGAACaacttttgtttgatttggtcACTGGGTGAAGCTTTAGTATTGGTCTTTCGGACGGCTCGCAAAGGGATGAAATAAAAAGGTGTAGCAACAGTTCTGGGTAACGTGGAATAGTCAGCCTTcttgacttttgttttcttcgtTTTAGTGTCGccttcttgtagcgcagatttccgcagttctacGCAGATATGCAGAATCtctccgctcccattggtggagccgcgcagaacttcTGAGATCTGCGCAACAAGAGCAGACACATGTTCCGAGTTGTCCGACCTCCGTGAAAGTGACTTGATCGTGCAGTTTGGCGTGTTTTAATGATCGCTTTATACTAAGTGTCATTTTTGCAGTGGGTCCTAAAGCGGAAGAATACGGGGGATTTCATTTACAATCTAATCAATCTTAACTTAAAAATCGCATGAGATTTAAAACGAGTCAACCGTATAGAagctttatttcctttttaattagtCCTAGCCTATACATCCTTCATCAGGTTAGGCAGACACGATTAAACTGGAGGATGCCGTGTAGTCAGAACTGTTGCATGATCttgaagttttattttctctctcgtAGATAAAACATGGCGTCAATGGAGGTGATTCAGCAGCAGAATGTGGTAGCTAGAGTTGCTAACCTGCCCCTGGTTAGCTCTACCTATGACATGGTCTCCAATGTATATTGTAACACTAAGGAGAATCACCCCTACATCAAGTCTATGTGTGAAGTGGCAGAGATGAGTGTGAAAACCATTACTTCTGTTGCTCTTACCAGTGCCATGCCTATCATCAACAAACTGGAGCCTCAAATTGCAGTAGCAAATGACCTGGCTTGTAAGGGTCTGGATAAAATTGAGAAGACTTTGCCAATCCTTCATCAGCCATCTGACCAGGTTGTCGCCAATGCTAAGGATGTTGTAACTGGAGCCAAGGATGCAGTGGCCATCACTGTGACTGGTGCCAAGGACACGGTGTCTTACACCATCACTGGAGTGGTGGACAAGACCAGGGGGGCAGTGCAGGAGAGTATGGAAATGACCAAAGCGATGGTGAATGGCAGTGTGAACACAGTGATGGGCAGCCGTGTGGTGAAGATGGTGAGCACTGGAGTGGACTCGGCACTGAGCACATCCGAGTCTCTGGTGGACCACTACCTCCCCCTGACTGAGGAAGAGCTTGAGAAAGAAGCCAAAAATGTTGAAGGATTTGAAGTTTCAAGTAACAAGCCAAGCTATTACATCAGGCTGGGCTCCCTCTCGGTCAAGCTGCGCAAGAGGGCATACCACCAGGCAATTGCCAAGGTGCGAGATGCTAAACAGCGGAGTCAGGAGTCCGTTTCTCAGCTTCACTACACTGTGGATCTGattgAGTATGCAAGAAAAAACATGGACAGTGCCAACCAGAGGCTTCACAATGTCCAGGATAAACTGAACTCTTGGGTGGAGTGGAGGAAGAAGTCTGGGGACAGTGAGGTGGAAAAGAATGAGGCGGAGCAGATCGAGTCACGCACTCTGGCCATAGCCCGTAATCTCACCCATCAGCTCCAGACAACCTGCCTGACCCTGGTATCCAGCATCCAGGGTCTGCCCCAGCACATCCAGGACCAGGCTCACTCAATCACCCACGCTGCTGCCGAAATCTACAGCAACTTCAGCTCCGTCTCCTCCTTCCATGAGCTCTCCGACAGCATGCTGGCCAGCAGCAGAGGGCAACTGGGCAAAATAAAGGAATCGCTGGATGGTGTCATGGACTACCTGGTCAACAACACCCCCCTCAACTGGCTGGTAGGTCCCTTTTACCCCAGGCTGAGTCCCAACCCTCAGCCCAGCCATCACAGCGGGCAAGAGAAGAAAGGGGAAGAGATGCAGGAAATGCAACCGCTGAACTCCGCAGACTAGTGCTTTAGCTTTAAATTAACTCTGCTTTATACGCCAAGCCTGAAGTGAATTTCTCATTGGTAGGGATTTGGGGACCGGGACCTATCCTCTTTGAACTTGTGTAGCAGTTTGCAGTCTAGTACTACAGTATCATTTTGTTccttttatactgtatttttgcatataAGCAGGAGAAGGCATTCCAATTTTAATTGCAATCAGTACAAAATTGGCTAAATTACAAACACTGGCTATTTTATGTGTAAGATAAGTAAATTGAGCACATGTTAAATGGCTATGAAACTGCACTTTTGATTTGAAGGGTGTGTTGAGAGGGAAATCTGTTAAATCACTTAAGGGTGTACTGTCCCACAAAACgtaatgttctgtttttccGTCCCGTTTGTGATGTTGTAGCTGTTTGCTGCTGCATATCCTGCTTGTAGTTCACCGCATTTGTCTTCGTGCTGCTGTAGTAATGGCTGCCTCTGCTATGCTTTTTGTAGTCCCCCTCCCATCCCTACCTTTGTGCTTTTTGTAAGATGAAAATAGGTAAACCTAAGTAATCCtggaatttgaaaatgtaataaaatattcattgtCACTGCCTTTTGTGCTATAATCTGTGCCTTTTAGTTACTCGTTGGTACTATTGTGAATTTGTATGTCAATCTGTCTTGTATAACCAtttgtaataaacaaacaagcattaCATCTGTGTCATCTTACTCTTTTGGAAAGAATAAGAATTTTAAGCAATAGATAGGCTTTTCAAATTGACATTCACCAGAGTTTTCAGGCTTCCATAAAGCAGGGTTTATAACACAAGGTTTTGAAAGTGTGTTCAAGATTTTCTTGCTGAAAATTCTGCTGGATGTCCATTCTTTAATGGACTGCTATTGCTTGTACCCCAATATCCAATGAAATGGCTGCAATGAGGTCAATGGCTTGCATTAGGAAAGCACAACCCTGCTTGTGGTTGAAGATGGGTTTCACCGTGTGAACAGAATTTATTCATCCCCATTCATTCTGGTTTGATCTTTAGGAATGCAAATGCTATATTTCCATCCAATAAAAATGGCAGGGGTGAAGTAAAATTTTATGGACATTTTTCCTATTTACTGTAAGTGTAGGATGTCCCTTCTCCATCTGATGTGGTCAGCTTTTCCTCCATTTAAGTTTTGTTGCCTATAGGGCTTTTGACTCATTCAGCATGTGATCTGTAAGTTCAGTGCTGTGCACAAGGTATGgcacaataaaatgcattccaAGATTTGTATAGAAAGGTAACCATATACTTTGATTTGTTGCAATCTGAAAGCTGGATTTATACTAACCAAATGgcattttgtttgtagttttctggGAGGTGGTGTCCATTTTTGAGTTCAAAGAATGCATGCCTCTTGTGTTGCTGCTTCTGTTTTCTGGAGTTCTGGGTGTTTAACTTCAAATGCAACTTTTCAGTTCTATTTGTGGCAAAAAATATTGTACAGCTTCAAAATTTTAAATGTGGGTGCAAGTTCACGAATTCAAGTTTCCTCTAATGTTCTTGTCTCCAGTTGTGTGATGGAAAGTAGTATGAAACTGCCActggtgggaggggggggacCTATCCATACAATCCCTTTGACCAAAGTGTGAGTTGGGTGTTTTGACATGGTAACCATAGCCTTTTCAGTTGCCAATTGGTTATGCATTTGTCAATTTGATATATTCATTTTTGAGATGACCTGCAGCTTGGTTTTCACTTGGAGggttataattgtttatttgggttttattaaaagcacttgtaattttatgtatacatgcatatattttgaatgcTCTGTTTACACACAGCTTTCTTTTACATTTGACAGGTGCCCGATTTCACCATCACGGACCTTTCCTCTGAGCCAGACGACTATAACCAATCCATTGATGATCCCGATTTCTCCTTTGACTACTCCCGTGCCAATGGCCTTGTTTCACCAATCTCTCTGCCAAATTAAGCCTTTTGAccataagtttaaaaatgccTGTTGCTATATCATGAACATTTGATCATTCATTGTAGTGTGGTGTTTTGGGGTTCATTTGGTGgttttggattatttatttttttcctaataaaatatttgcagcTA

Function

GO: NA

KEGG:

id description
K17284 PLIN2, ADRP; perilipin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017788 True 4085 mRNA 0.43 7 23423691 23430213

Neighbor

gene id symbol gene type direction distance location
AMCG00017789 NA coding downstream 1565 23411661 ~ 23422126 (-)
AMCG00017787 NA coding downstream 35196 23355606 ~ 23388495 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding downstream 77774 23330944 ~ 23345917 (-)
AMCG00017782 aco1 coding downstream 110232 23296688 ~ 23313459 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding downstream 144649 23264034 ~ 23279042 (-)
AMCG00017790 NA coding upstream 15711 23445924 ~ 23457016 (-)
AMCG00017791 NA coding upstream 28714 23458927 ~ 23464763 (-)
AMCG00017792 NA coding upstream 38626 23468839 ~ 23519026 (-)
AMCG00017795 dnaja1,LOC106591825,LOC108431796 coding upstream 187467 23617680 ~ 23627418 (-)
AMCG00017796 LOC105419749 coding upstream 203242 23633455 ~ 23646547 (-)
G93165 NA non-coding downstream 93947 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 127445 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 128322 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 133010 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 584257 22839151 ~ 22839434 (-)
G93173 NA non-coding upstream 13998 23444211 ~ 23540120 (-)
G93324 NA non-coding upstream 477362 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 604483 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 613981 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 871207 24301420 ~ 24301980 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 101737 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3065066 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4004335 19412987 ~ 19419356 (-)
G92436 NA other downstream 4960515 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5633942 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 834466 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1515882 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1567331 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2514928 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2582275 26012488 ~ 26015942 (-)

Expression


Co-expression Network