AMCG00017792


Basic Information

Item Value
gene id AMCG00017792
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23468839 ~ 23519026 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017792
GCAAGATCCCCAGTATCGGCATGGACTGGCCCTGCCACAGGGACCCCTCTGCTCTACTGCTGCTCCTGGGACTTGTAGTGCTGTTTTGGCTGATGAACCAGCAGGAGTTCAAAATTGGAATCCATGCTGGGAGTGAAAACAATCCTGGATTGATTCTCCACAGCATTGTGCCAAAGCAGTCCATCTTGCCAGACCCTGAGAGGGAACAGAGTTCACGGACGGCCCGCTCAGAGGAGGACAGGGACACACTGTGGGACGCTTGGGGGCCCTGGAGTGACTGCTCACGGACGTGTGGTGGAGGGGCCTCCTACTCCCTGAGACGATGCCTTAgctcaaaGAGTTGTGAAGGGCAGAATATCAAGTACAGGACATGTAGCAATGTGGAATGTCCCCCTGAGACTGGAGATTTCCGTGCCCAGCAGTGCTCTGCCCACGTGGACGTCCGGTACCAGGGCCAGTACCACGAGTGGCTGCCCGTGTACAATGACCCCGAGAACCCCTGTGCCCTCAAGTGTAAAGCAAAACGGACGGCCCTGGTGGTGGAACTGGCACCTAAAGTGCTGGACGGCACTCGATGCTACACCGAGTCTCTGGATATGTGTATTAATGGTATTTGTCAgATTGTTGGCTGTGACCATGAATTAGGAAGCACCGCCAAAGAAGACAACTGTGGAGTTTGCAACGGAGATGGCTCTTCCTGCAGGCTGGTCCGAGGGCACTATAAATCCCAGCTCTCCACCAGCAAGAGAGAAGACACCGTCATTGTCATTCCCTATGGAAGTCGCCATGTTCGGCTGGTCTTGAAAGGCCCAGATCACTTGTATTTAGAGACTAAAACCCTCCAAGGGCAGAAAGGGGAGAACAGTCTGAGCACAGCTGGCTCGTACCACATCGAGAACACAACTGTGGATTTCCAGGAGTTCCCAGACAAGGAGATTCTGAGAATGGCTGGACCTCTGAGGGCTGACTTCACTGTCAAAATTCAATATGCCAGTTCCTCAGACAGTGTGGTTCAGTTCATCTTCTACCAGCCTATTATTCATCGCTGGAGGGAGACTGATTTCTTCCCATGCTCAGTCACTTGCGGTGGGGGGTACCAGCTGACCTCAGCGGAGTGCTTTGACCTGCGCAGTGGCCGTGTGGTGGTGGACCAGTACTGCCATTATTATCCTGAGAACATCAAGCCCAAGCCCAAGCTGCGTGAGTGCAACATGGACCCTTGCCCTGCCAGTGACGGCTACAAGCAGATCATGCCCTATGACCTCTACCACCCCTTACCTCGGTGGGAGAGCAGCCCCTGGACGGCCTGTTCCACCTCGTGTGGAGGGGGGATCCAGAGCCGTGCTGTATCTTGTGTAGAGGAGGACATCCAGGGCACTATCACTGCAGCTGACGAGTGGAAGTGCCTGTACTCCGCTAAGATACCCATCCTTCAGCCCTGCAATATCTTCGACTGCCCCAAGTGGCTAGCACAGGAGTGGTCCCCTTGCACAGTGACCTGCGGACAGGGGCTTCGTTACAGGGTGGTGTTGTGCATTGACCATCGGGGCCTGCATGCGGGGGGCTGCAATGCCAAGACCAAGCCACACATCAAGGAGGAGTGCATTCTCCCGGTGGAAGCCAAGCTGCCCTGGTTCAAGCAGGCTCAGGAGCTAGAGGAGGAGACAGCAGTGACCGAGGACCCCACGTTCATCCCAGAACCCTGGTCACTCTGCAGCAGGACGTGTGGTGCTGGGACCCAGAGGCGGGTGGTGAGGTGCCAGGTCCTGCTGTCTTTCTCTCAGACGGTGGCTGATCTCCCTGACGACGAGTGTGAGGGGCCCAAGCCAGCCGAGGTCCAACCCTGCTACAGGAGCCCCTGCGCCGCgggggagggggaagaggaggaggacgtCTTGCAAACTGTGGAGAAGGAAGAGCTTAACGACTGGGAATATGAGGGCTTCACTCAGTGCTCTGAGTCCTGCGGGGGAGGTCTGCAGGAGGCAGTGGTGATCTGCCTGAACAAGCAGACCAGAGAGGTGACAGACGAGAACCTGTGTGTGAGCCACAGACGCCCCCCCCAGCTCCTCAGAGCCTGCAATACAGCGCCCTGCCCACCACGATGGGAGGCAGGCACGTGGAGCTCCTGTTCGGCGTCCTGCGGAGTTGGTTTGAGGAGCCGCAGCGTGGCCTGTAAGCACCTGCAGTCGAGAGTGAACAACGAGACAGTCACTGTGAGCGACGACAAGTGTCGACTGCCCAAACCCAGTCCCGTCCAGGCATGTAACCGCTTTGACTGCCCTCCAATGTGGGAGCCGCAAGGCTGGCAGCGGTGCTCCCGTAGTTGTGGAGGAGGGATTCAAAGGAGGGAAGTGCTCTGTAAACAGCGCCTCTCAGATGGTAGTGTCCTGGAGCTGCCCGAGACCTTCTGCCCGTCCCTGAGCCTTCCTGTCCTGCAACCATGTGAGACCAGAGAGTGCCCAGCCAAGTGGGCCTCTGTGGAGTGGTCACAGTGCTCCGCAACCTGTGGAGAAGGAACTCAGAGGCTGGCAGTGGTGTGCAGGAAGCAGGAAGAGAACGGGGAATACATAACCCTCAACTCCACAGCCTGTTCCTCTTTGCCACAACCCATGACAGTCAGGGCCTGCTCCCTGGGACCATGTGGAAGGTCTTATCGGCCTGGAGGTTCAAAACATGGTCCAAGTATACTGGCTCAGAAGAAAGTGTACATACagtggagaagagaaaaaaagctaCAGTTTGTCATCGGAGGATACGCCTATCTGTTGCCTAAGACCTCTGTGGTCATCCGCTGTCCTGTCAAACGCTTTCGTAAGAGTCTGATAAGGTGGCAAAAGGATGGCAAGCCACTGGCCAGTGTGTCTCATCTCACAGTCACTTCCTTTGGTTACATTAAAATCCAACATCTCAAGCCCTCTGATTCTGGGATTTATTCATGTATGGCAGGCCAAGCACAGGAGAATTTTGTGATAAAACTCATTGGTAGTAAACAGAGGGTCACTGTGCCTGATAATCTGAGGTCGACAGCCACTGGCAAAACCCTTCGAGAACCTTTCATTTTGCAGGACAAAGCGCAACCTCTAAGGAAACACAGCCAATATGATGACATTGTTCTACAGCTCCTAGAGCTGGGAGGGCCACTGAAGGAGAATCAAGACTCAGGGGAGTTGCTTGGTTCATCAGAGAAGAACATTTCCTTTTTGGAGGAGGACCACAGCCTGGAGGTCTCGGCTCCTCTGACCCTTGTGGCAGAGCAGTGGAGACTGGATGAGATCATCAAGAACCTGCTGCTTCAACCTGAAGATCTCCAGGGTTTGTATGGCAACCAGCTCATCACACAGCTGCTGGGTGAACTCACCAAGAACCAAGGGGAGAGCAATGAATCGACTTTGCATTATCCAGAAAGGGGTGAGTCGTCTTCCCTGGAATCAACCACTCACAAAGTCATAAACCCTGGGATGCCAAAAGTGTCTCCTGACAACACAGGACCACCTAGGTCTTGGGATTCTGTGAGAACACTCAAGGAACGGCTTAGAGCTCCTTTAATTGTACAGAACAATGTTAAGAAAGACCAAATGGCCCCCTCAGAGGTAGTTGTCCATGTTGGAATCCCAGTTCTGCTGCACAGGTGGACCAACAAGCTGGAGCTCAGATGTGAGGCAGTGGGTAATCCTGAACCAGCTGTCAGCTGGTCGAAGAATGGAAAAGAGCTCGTTTACGGCAACAGGGTGGAAAAGCTTCCAGATGGCTCGCTGAAGATCCTGGCCCCGAGTGAGGCTGACGCTGGGCGGTACACCTGCACTGCCAGGAACTCCATCGGCTCCGTTTCCCTTTCCTCGGCAGTGCAGCTTGCAGCCCCCCCACAGGCTGCCCTGAAGGATGCAGACTGGTTGGCTCTTCTCTCGGTGACAGAGCGAGACGTTCACACCCTCGTCATCCGCGGCAACAACACCACAGCGACTCTGAAGGCGGGGTCTGCCCTTCTCATTGGCTGTCCTGTGACCGGTTACCCCAGACCACACATCTCCTGGTTTCACAACAGGCAGCCTCTGGGCAACACCATGGGGATTTCATATGAGCTGCTGGCCGAGAACCAAGCCCTGAAACTGTGGAACGTCACGGCGAGTCTGACAGGGGAAGTGAGCTGCCTGTCTGTGAACGAAGCAGGGACCCTACTGCAAAGAGTGGGCATAGACGTGGATGGTGTCTCCTTGGTCACTATGTTCACGGAGCTGCGGAGGAGGTCAGCACAGCCGCAGGGTGTCCTGCCACAGAGTGACAGCAGTTGGTGCCTCAGACCCCTTGGCCAGGGATAGTTGTGCTGGGGCAGGACGAAAACCCCCAGAAACCCAGCCATGCAACACAGGGCCCTGTGTGGAGTGGGCAGCATCAACCTGGGGCCAGTGCCAAGGACAGTGCATCGGACCAAGACTggcaacacagcacagacaggtGTTTTGCCAGAACAAGAATGGAACTGGCCTTCCCCACAAAGACTGCAGTGCATTACCAAGGCCCAGCGGCTCTCGGAACTGCTCCTCCGAGTCTTGCGGGGTGCAGTGGCGAGTGAGCTCCTGGACTCAGTGCACGGCCACCTGCGGGAGCCACGGCTTCCAGTCCCGACAAGTGGTGTGCATCCACCAGCGCAGTGGCAAACCCGCACGAGAGCTACACTGCTCCTGGAGCCCACGGCCTGCCAACTGGCAGCGATGCAACATTATACCCTGTACTAAGACCGAATGTCAAGACACCACCAGGTACTGCGAGAAAGTGAAGCAGCTGAAGCTTTGCCAGCTTGTGCAATTCAAGGTGCGATGCTGTGACTCCTGCAGGGACACCTGAGAACACGGCTGGGTTTCTGTGGACGGGAAAGAAACACACAGTGTGATGGAAAGACCCCTTTAGAGGAGAGGGGCCCTGTCAACAGGACTGGATTTTATCAGAAAGGACCCATCCACCGGAGGAAACCTTACGGACGGGGGTGAAACCAAGTTGTAAAAGTTCCTTTGACACCAATGAAGgctttttgtgttatttgtcttttttatttattttacttttgatgCGATGGTTGTGGGCCAGTAAGCAATAAGACTTTGTTTTGTGCCAGGCCAGAGGATTGCACTTAGATGGCACAGAGAAGGACTCCTTTGTCATCTTGTAAGTAGAAGTATGTCTCATACATGTCTTTGAGGAGCACAAGACTTAAAGTGATTATCACCAGCTGGAGGGCTTCACAGTATTAACAAATGGGAGTAAGACAATGAGCCAATTTGGGCTTCATGATTTTTGCAGGCATTGCGCTTTGCTGATTAttggtgtatttttctttttttaagaaaaccactggaaatgtgtatattaagTTATAAGCTGTTGTTTTACAGTGGGCCAAATGACATGTTTTCTCAGCATGGCTCAGTTTACCAcagtcacacaaaaaaacagaatgataaaatgtaattgtgaagGTTGGTTTAcccataaaacataaaattccTCCCACGATTGTTTGACATCGCACTTATTGCAGTTGTAACTCATTAGACTTAAGCAAACTTAGGTTCAAATTTCAGGTAGAGTCTCCCTCACTAACATGTCTTAGAGATGTTACCAGGCCATTCTCATCAGAGAGGTTCTGTCCcacctaaatatatatttttctatcaaAGGAGAGCCACTGAATAGATTTCTAAAGACTTAAAcatcacagtttaatttgttttatataaaagtgCATTATAAAAGatagaaaatatttgaatgtaaagCTACATATCTAAACACATAAATGTGGCTGATACCTAATTTAGCTTTGTAGGTAATAAAAAGTAGGTGAGAAAAagatatttgtaatatgaaacCTAAATTTTATAGCTGAAAAAATCATTTTTACAACACGTAAGATGTAAGAAAGACGTTTTAGTCACCATAGGACAGCATGCTTGTCATGTTAAAACTGGTGATAGACAGTTTATCACAATTTACTATTCTATGTGAAAGACTGTGAAATTAAAGAAGTCAAGATTTCAATTAGTCCAGGAACTACAGGACTGGAGctttcttttaatgtttcacAGGTCTTGTTCTTATGTTATGCCACAAATGTCCCATTGCTTAAATAAACCACAAGGCCCATTTTAAACAGATTGTGCACACAGTCGGTATGTGGGTTCACTTCCCCGTGTCAAGTGGTCACCATGGTCAAGGACATTCGCCAACAACAGAGATATATTTCCAGAAGCAAAACTTGCTTCAGAAAAGTGTTCCCAGAATGCTGTGGTAGAGCTGCAATCTGTGCAAAACCTGCGTGTGCATGAGTGGGATGCGGGAGCTCCGACATTTTTAGTTTGATATTTCTAGACAGACACCAGACACACTGGTTTTCTTCTAATCACACCGTAACAGATCCAGAATTTTCCCAACAGAGACTGCTATCAAATTGCTTAGACCAGGGCCAGGGAAGTCAGTGGGAGAGAAATATAATGTTCTTGTCAGGGAAtactcttaattaaaaaaagaaagacaaaacggatctgtattgttttgtaaataatttaatgagATTTCTTCctctgttcatttttttaagtactatattggatatatttattaaaatgtcttttattcaaaatgtgcaatgattttagaaattaaaggaaagaaagaaacatgatttatttaggTCCGTTGTTGTAAATGTgcttcatatttgttttcttcatatcccttttaagatttgtttagtttctgttgATGCAATGCATGAAATGAAGGGGATCTTTCCCAGATTCATTATATTTTGCCATTCTGTACCAAATACATAGTTTCCCTCTAAACAATAAATGGGTGTACATTCCTTTCATAA

Function

GO: NA

KEGG:

id description
K24429 ADAMTSL1_3; ADAMTS-like protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017792 True 6871 mRNA 0.50 27 23468839 23519026

Neighbor

gene id symbol gene type direction distance location
AMCG00017791 NA coding downstream 4076 23458927 ~ 23464763 (-)
AMCG00017790 NA coding downstream 11823 23445924 ~ 23457016 (-)
AMCG00017788 NA coding downstream 38626 23423691 ~ 23430213 (-)
AMCG00017789 NA coding downstream 46713 23411661 ~ 23422126 (-)
AMCG00017787 NA coding downstream 80344 23355606 ~ 23388495 (-)
AMCG00017795 dnaja1,LOC106591825,LOC108431796 coding upstream 98654 23617680 ~ 23627418 (-)
AMCG00017796 LOC105419749 coding upstream 114429 23633455 ~ 23646547 (-)
AMCG00017807 NA coding upstream 152618 23671644 ~ 23690436 (-)
AMCG00017805 NA coding upstream 231345 23750371 ~ 23760237 (-)
AMCG00017808 NA coding upstream 276887 23795913 ~ 23812448 (-)
G93165 NA non-coding downstream 139095 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 172593 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 173470 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 178158 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 629405 22839151 ~ 22839434 (-)
G93324 NA non-coding upstream 388549 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 515670 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 525168 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 782394 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 986356 24505382 ~ 24505610 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 146885 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3110214 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4049483 19412987 ~ 19419356 (-)
G92436 NA other downstream 5005663 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5679090 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 745653 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1427069 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1478518 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2426115 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2493462 26012488 ~ 26015942 (-)

Expression


Co-expression Network