AMCG00017795 (dnaja1,LOC106591825,LOC108431796)


Basic Information

Item Value
gene id AMCG00017795
gene name dnaja1,LOC106591825,LOC108431796
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23617680 ~ 23627418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017795
ATGAGCACATGTGCTTCTCCCAGCCAGAGCTCCACGTGTTATGGGCGGGGTTTGGGCGTGTACGTCATCGAGCTCAATGACACCATATCCGGCCGCCAGCGGAAGCGGACTGGAGGAAGGTTCTGGAAGTCTGTCGCCGGGGACGAGCGCCGTTTCAAGTTTGTACTAGTCTCCCTGCCTCGCCTAGCGGCCCCGCGTCACCCAGCCGCGGAAGGGGCGGGGGCAGCGATGGTGAAAGAAACTGGATATTATGACGTGCTCGGCGTCAAACCTAATGCCAGTGCGGATGAGCTGAAGAAAGCCTATAGGAAACTGGCTCTGAAGTATCACCCAGACAAGAATCCAAATGAAGGGGAAAAGTTTAAACAGATTTCCCAGGCATATGAAGTGCTTTCTGATTCCAAAAAGAGAGAGCTGTATGACCGAGGAGGCGAGCAGGCTATTAAAGAAGGAGGTACAGGAGGAGGTGGTGGGTTCGGTTCACCAATGGACATCTTTGACATGTTCTTCGGTGGAGGTGGAAGAATGCACAGGGAGAGGAGAGGTAAAAATGTGGTTCATCAGCTTTCTGTAACTCTGGAAGACCTATATAATGGGGCCACAAGAAAACTTGCAGTGCAGAAGAATGTCATTTGTGAAAGATGTGAAGGCCGCGGAGGACGGAAGGGAGCGGTGGAGTGTTGTCTCACGTGCCGCGGCTCTGGGATGCAGGTGAGGCTGCACCAGATCGGGCCGGGAATGGTGCAGCAGATCTCCTCGGTGTGCATGGCCTGCCATGGCCAGGGGCAGCGCATAAACCACAAAGACAAGTGCAAAACCTGCAATGGGAGGAAGATCATGCGGCAAAAGAAGATCCTGGAAGTTCACATTGATAAAGGCTTAGACCTGGAGTTTCCAGAGGGCTGTGGGAGGgTGAACTTCCCAGAAGAGAACTTCCTTTCCCAGGACAAACTGAAGCTGCTGGAGGGCTATTTGCCTAAAAGGAAAGAGATTGATGACACAGAAAACATGGACGATCTCTATATCTATGCAGATCTGGAGGAATGTGACCTGTCGCAGGAGAGACGGCACTTTGAGGAGTACGATGATGACGAGGATTACCATTCCCGAGGAGGCGTGCAGTGTCAGACCTCTTAGAGAACTTGCCAAGAGCGTCCTTGTAGAGGACTTGATCTCCGGACAGCTTACACAATTCAGTGTCAGAGAGTGTAGacaagatttttattttaaaccatggCACAGATGTGCAGATTTGGCCTTTTTTTGTTAAAGGAAATTCCCAAGCCGTTCAGTGCTagaaacaagttttaaaaagcTTGGCGATTTTTCACCAcatttagttaaaaataattacatttcattgagAAGACCGGTCAGTCCACTCAGTTGTGAAGGAAGTCCTTATCTTGTCCTTGTGAATTCCTGTCCCTGTTTCTGAGCCTCTGTTGAAAGTTGAAAGATTTGAATTGTAGGTCTGTGAGTGTTATTACAGGTTGGCCTAGCAAGGCACCGGAGACGCACCACATTGCTTTTGAATAATTAGGGATTTATTTGTGAGATTGTGGGTCCTTGTCCTGCACACAGGCTGTATGTGTTGGCTGAAATAGGAACAGCAGGGTCAGGATGAAGGAAAGAACGGCTTCTCCAGCTGCAGTGACCTCTTAATGCCAGACTAAATTTAAAGCAGAGATTCATACAAGGTTTAATAAACCTATTGTTTGcttaaaatatacacatctTCACACATTCCTTTCTAAAGGATGAGCCCACATGCAGATGGAGAATGATTCAAAATGTAGGATTGAGTATTTGTGCATTTACTGAAAGTAGGCCTGAGTTTTTCATTATGCTCTAAGGACACTggcacagttttattttttcagttttatatctACATTTGTTAAGTAATCCTCCAACATTTAGTAACAATTTAGCAAACTAACTTTGTCCCAAATTATTTGTACTTAGGTTAAATTGGTGCCAAATTTGTGCCATACCAAGGAAAGAGCagctttttattaatattaatggtaATTTAACTACagtcattcaaataaatgtccTTATAGAATGGCATAATAAAGAGATGTGTGCTAAGGCGTTGGGGTTTAAAGCTGCTGCTTTaggtaatttgtaatttaatctgtattttaatgcacaTACAAAAAATTCTAGGCATTCTAGGAAGAGCCTTCTAAAAAGATGTTCTAGAAAGATTTAAGGGGAGGCAAAAACATTGGAGATGGATCAAGTTCATGCTTCtccaaaacactgaaataatgaaaacacttGGACCCACATAGTTTACATTCTTGAGCTGTCAACTGATGGGGTTTTCTGTGGGTTTACTTGTTGATTAGTTTTAGGACTTGCTTAATCATTTTAAGTGTGCTTTATACATCTTCATAAATTCAGAATTCAGTGCCCtgcattttgatttttgttttccttcttaaaataaaaaaaagagaaatccaGCAACACATCCATATGAAGTGGATGGGTCTGATGTAACAGCTCATGTTAAGGTTCTTGGACAAGTGCAAGATGCTTTTAACACTTCAGACTGGAATATTCTTATTTCAAGATCAAATGGAAATAAGCACTTCTGTGCTGCAAATAATGTTTACTTAAATATCTGGGCCGGTTGTACTAGGACCaattattactgtttttgtacatatttatatttacagttaaGCACAATAATTTATTCCCCAAGTCTTTAatttcacacactgcacagtgattattaaaatgtgtacaagTGCAATGGTAGACATCATGAACAgaatttcagaaaaaacaagACTGCTGTAATTTCATAGTGCTTGATATGTATTCCTGTAATGTGtgttaagaaaattaaaatcttcCTTTTACCTAGCTTCATATAATTGCCATTGGCTATTTCTTAAAGCATTGAAACACTGATGACTGACTGATGAGGATAGGAACGGGGCTTTAAAAgtggaagttttttttaaatcacattagaAGCCCAATCTACATCCTCGTCTCCTTTCCCCCTGGCGTAGGGCTGAACCAGTATTCTTGGGGCACTAGACTTGGGAACCTAATGATCATGGGTCTATCATGTCCCAAATAATTACATGGATTTTGGAAGTGATGGTCTCATTTGACAACACAAGAATATggatacttttattttaataagc

Function

symbol description
dnaja1 Predicted to enable several functions, including ATP binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to act upstream of or within protein folding and response to heat. Predicted to be active in cytosol. Orthologous to human DNAJA1 (DnaJ heat shock protein family (Hsp40) member A1).

NR:

description
PREDICTED: dnaJ homolog subfamily A member 1-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017795 True 3179 mRNA 0.42 8 23617680 23627418

Neighbor

gene id symbol gene type direction distance location
AMCG00017792 NA coding downstream 98654 23468839 ~ 23519026 (-)
AMCG00017791 NA coding downstream 152917 23458927 ~ 23464763 (-)
AMCG00017790 NA coding downstream 160664 23445924 ~ 23457016 (-)
AMCG00017788 NA coding downstream 187467 23423691 ~ 23430213 (-)
AMCG00017789 NA coding downstream 195554 23411661 ~ 23422126 (-)
AMCG00017796 LOC105419749 coding upstream 6037 23633455 ~ 23646547 (-)
AMCG00017807 NA coding upstream 44226 23671644 ~ 23690436 (-)
AMCG00017805 NA coding upstream 122953 23750371 ~ 23760237 (-)
AMCG00017808 NA coding upstream 168495 23795913 ~ 23812448 (-)
AMCG00017806 LOC108277608 coding upstream 194316 23821734 ~ 23840163 (-)
G93173 NA non-coding downstream 77560 23444211 ~ 23540120 (-)
G93165 NA non-coding downstream 287936 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 321434 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 322311 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 326999 23290332 ~ 23290681 (-)
G93324 NA non-coding upstream 280157 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 407278 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 416776 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 674002 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 877964 24505382 ~ 24505610 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 295726 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3259055 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4198324 19412987 ~ 19419356 (-)
G92436 NA other downstream 5154504 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5827931 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 637261 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1318677 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1370126 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2317723 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2385070 26012488 ~ 26015942 (-)

Expression


Co-expression Network