AMCG00017797


Basic Information

Item Value
gene id AMCG00017797
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23844922 ~ 23857827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017797
TGGACCCGACTCGCCCGCAGCACGAACACCGCGGAGCGACGGTAGGGTTAAACCGGGGCCGGGGGGCCTTACATCGGGCCGTGTTTGAGCGACAATCTCCGAGCTGAAAACTTTGCAAActgtttgaaagaaaatggaGGGGGGTTTCGCTGGCGGAAAAGGGAGAGGCGCTGTCCAGGGCTGATTCAGAGCAGCGGAGCTCGGGTTTCAGCACGGAGATCAGGACCACGGCTAACACACTCCGCAGGAAAGTTGAGGACAGCATGGCAGCTCAGACTGTGCACCCAGTAGGAGTGTTCTCCTCTCCAGTGGGAATCCCCCTGAGTGGAGAAGTACAAGGGCTGACCGAGCTCTCCAGGACTGAAATGGCCGCCCCTCAGCTGGTCATGTTGGCTAATGTAGCCCTGACCTCGGAAGTCAATAACTGTGAATACATggtggaagaaaaacagatggtTGAGCTCAAAACTGTGGGCAGCACTTTCTCGGACAGCGAGGAGGAAGACATTGTCAGGTATGATTACGATAACGAAGGGGACATGCCTGTGGGCTTCTATGCAGAGACATCGGGTGAAATCGTGTCTGACGAGGAAGGGCTGCAGAGTGAGCCCGCATTCTGCCACTCGCCCACCAGCTCCAAGAGGAAACGGGGCCACCACTGCCATGAAGTGGCCAAAAAGAAGAAGCCTTTTCACTGCAAGCCATGCCAGTACCAGGCGGAGTGCGAAGAGGAGTTTGTGCATCACATTCGCGTCCACAGTGCCAAGAAGCTGATCGTGGTCGGGAGGGCCGAGAATGAGGAGCAGCTGAAGGAGGCGGCGGAGAATACAGAGGGAGTGGTTTACAACAAGGGTGTGATCCGCTGCGAGAGGTGTGGCTACAACACCAACCGCTATGATCATTACATGGCACACCTCAAGCACCACAACAAGGAGGGGGACAGCCAGCGTGTGTACAAGTGCACTATCTGCACCTACACCACTGTCAGCCAGTACCACTGGAAAAAGCACCTGAGGAACCACTTCCCCAGCAAGCTCTACACCTGCTCCCAGTGCTGTTACTTCTCTGACCGCAAGAACAATTACGTGCAGCACATACGCACCCACACAGGTGAAAAACCATTCAAGTGTGAGAGCTGCTGTTATGTTGCTGCTAACCAGCACGAAGTCACACGTCACGCCAGGCAGGTACATGACGGGCCCAAACCCTTGAGTTGTCCTCACTGTGAATACAAAACTGCCGACCGCAGCAACTACAAGAAGCATGTGGAGCTTCACATTAATCCTAGGCAGTTCCTCTGCCCTGTCTGCAACTATGCAGCTTCCAAGAAGTGCAACCTGCAGTATCACATCAAGTCCAGGCACCCGCACTGCACTGAGATCACCATGGATGTATCAAGGGTGAAGCTGCGGAGCAAGAGGGCCGAAACTGAAGCTCCTTACTATCAGCTTGAAGAAAACACTCCGTACACAATGACGAAGCTTGGCCAGAGTGGACAAGAAGTGCAACAGACTGggcaagagaaaaaaacagacaagcaaGAAAATGCTGACGGTGACAAGCAGACAAACACAGCTGCATTAAATCTTACGACCACCAAACCTACCAGGCCCACCtctgaaagagtgaaagagaaGGAGCAGAGGGAGAAGAACAGTAAAAAGGGGGAGGAGGCCTCTGAGAAAGAGAAGGCTGAAAAGGCAGATAAGAACAAGGAGAAACCCCCGAAGTGCACAGAGAAAGAGGAGGGttcacagaaaatgaatacagaaaaagAGAGTGTACAAAAACGAAATACAGAGAAGGCAGAGGAAATATCTGATAAAGCAGAAAAGAGCTCAGAGAAAACCACAAAGAACATAGACAAGATTGAAACTAGCACTAAAAGGGGAGAGAAGAACAGCACTGATAAATTGGAAAAGAAGAAAgtgaaggaaaacaagaaagcaGGTGAAGCCGCTAAATCTGCAGACAAGACCGTAAAGACCAGGCCAAAAAGAGACCGAAACCCAGGAAAAAACAACCCAGAAAAGGCAAACGGGACTGTTGAGAAGGTGAACAAGAACACAGAGAAGCCGCTTAAGACTACAACAAAGAAATCTGTGAAGGTGGGGAAAGCCCCCGAGAAAACAGATGGAGAGAAGACGAAGGAAAGCCAAGAGGCCATGGAAAAGAAAGTTGTCTTGAAGAAAGTGGCCAAGACCAAAgcagtgaaaagaaaagcagtcgCAATTGAACCCCCAACAGAGCAACAGATATCTGAGCATCCCTCCTCTTCcgtggaaaaaaagaagagaaaagtgAATAGCAAAGACAAAAATCCACAGAAAAGAAACATTCTCAGAAGCAAACGCAAAAAGCTGAAGAGCTGTAAGGCATCAAAACGTAAGGGCAAATCAAGTAAGAAAGCAGACTGGCCTGTTAGTGTCAAGCTAAAGAAGAAGACGAAGACCAAAAATATGAAGCTGGAGTTGCCGAAGGAAATCTCAACTGAAAATGAGGAGAAAAGTGATGCTAGTGAAGTTCAGGATGCTGTGCAAAGTCAAGAGTATCCAGTTACAGAGATACAGCTGGTCATCGTTGAGGAGGAGAATCAGGCTTCTGAGAAGATGGACGCATTGCCAGAGGAGAGCTCCACAGGAGAGAGTCTTGCTGCAGAACAGCACAGTGACGTCAGTGAAGAAAAAGACACTGGCATAGCCTCCACTGATCCCCCCCAAGAGCAAGACGAGCTTCCAGAGGAAACCAGGACTGAGGAAGAACCAAGAgatgaaacaaatgaaaccaATGAACCAAAGGATACTGCTGAGAGTGTCGACTGCAGCGACGAGCAAACGCCACACCGTGCGGAGGAGGCCCCGGAGCTGACCGAAACTGCAGATACGGAGCATTTGCCCCCTCTAGAACTGCCCCCAGTAAGTGACAAACCCCAGACTGAACACATGGACACAGAAGACGAAGGCATCCACAGCCATGACGGCAGTGACATCAGTGACAGTGTTTCCGAGGGGAGTGACGACTCGGGATTAAACGGTGTGGGAGCGGCTTCGGAGGCCACCAGCACGGCAGTAAAAGCCAGTGAAGAAGAGTCCAGGCCAACTCCCAAGAGTCACACCTGCATATTCTGTGACCGTACGTTCGCAGTGGAAGGGGAGTACAGAAGGCATCTGAACCGGCATCTGGTTAACGTCTACTACTTGGAGAGCGCAGTGGATGCGGACCAGTGAACGGTCAAGGGACACAGATTCTGTCTATATGGTCTATATTGCTTTACtccacattttttctttctgaagacaacatttgatttattttgtaatcttttGGTGTTGACAGTTGGTGGACCGGTGAAATGCTCAAGGGTTGTTAGCCTTACATAAGGTAAGGAATATTTCGCAACAAATGACTGTCACAAACCAGCAGCTGAATGCTAATTGACATAATGTATAGTGTAAAGCTTTATTGAGTTTGTAAATGTAAGGCTGGCTAGCTTTACCGACTGGCAGTTTAAAGATAGACTTGTGAAACTAGGAGTCTTGTAATTTTCCTTCTATACACTGTTGATATCTGACCAGGAATGATTAATTTTGTTGAGCTTTTCAGTGTCTGTTTCTCCTTCAGTGTAGGGGATTTCATGACCtttgaaactaaacaaaaatatttcaatgaaaactttttgtaatgaataaatataaaacaaattaatttccctTGTGAAATATAATACAGATGATACAATTCTCCATTGGCACCTTTGTCTTCTGTGGCATTTCAGTAGACTGCACTGAGATTGCTGCTGTAGTGCTAGAAGATTCAGATGAGATGCACAGATTTAAAGGAGCACCTGATGtgaatgcacaaaataaaataaacctagTTGGGTGTTTTCCATACATAAGTCGTTTCAAACTGTTATATGTAAAGAAACCCATAATGTTTAGTGGGATGTGAAACAATCCTCAAAGTTAAGActattatgaaattaaaatgtctgtgaCACAAGTTTAAGTATATCAGTCCAtccaacaattaaaaataaataactgctttaTAAAAATTACCACAACACACAAAACTAGAGAACCAAAGATACCCTTTGTGCTTCCACAGAAAGCCTAGTATAGACTCAGGTGACCAATCCCTAGCAGTGACGAACATATACTTATTTTGAAATCAGTCTGCTCAAGATTTCatctcattatatatttttagttgtGATGCATGTTGCAAGTTAGTGCTAATTGGATTGTTGGTTAATGAAaacttattttgctttttccatttattctttttcttaaaTCGAGCActttgcaaaaaatatataatcttttgtTTTGCCCTCCTATGAATTATCAACTGCAGTTGCAGATCtatgcagtaaaaaaaaaaaaaaagatgttcaaACTTTTGTGTGTTGTTCTTTCCAGTTTTCAGTTTGTCACTGTTGGAGCTTATAAGCATGTAAATGTATCAATGCCTAGTAGAACATATGTAATCAGTAGACTTCTGACGCGTATAAAATCTCGAAATATTGAAAATTTGGTTTTGTATGTAACATTTGAATATTAAGTCAATGGCGTCTGGTTTATGTTGTAAGATGAAATGTTCTGAGTAGAAATTGGTGACCAGGGCACATATTTCTTGTCCTTCTATCTGGCCTTTAGATATTAATCATTTTTGCCTAGAGTATTCAGATTAAATATGATCTGCCATTCATTTACATTACACTTTGGTCATAAACATAAGATTCTCCTGTGAAAAACTTCAAAAGTAATTGatgtaaatacatgcataaaatcATTTTTCATCTTCTATGTATCTTGCTCTTCTTGTGTTGACATCTAATCagctgtgttttagtttttagtgaAGTTTAATCATGACTTCTGCAGTCAAATTCAGGGTTTCTATGGATTCCTTGGCAAAGCAGATTCTTCATTTATGATGAATTGACTGAATCCGTTTGATCTAGTAttatgctgaaaaaaaaaaaaaaaaaagtcctgtaGTAGACTGGTGCAAATTGGTACAGTGACTGTGCAGTGTTAGAAATGTCTGTAAGTGCACAGATGGTAAGTCTGTAGTTATAGTTTAAACCTCTCTTCCCTGTAACAGACTTGATCAAACTGAAGTCTTGAAGCATGGCATTTAGCTAGAGTGAGATGTCAACCAAGTAAGCTAATCCATGGTTAGTTGATGTAAGCTACTGAGAAACTGTGCTCATACAGCCACACTTTGCATAGCAGGCTTTGGTGCTCATAAGGTACATTTGACAGGGACTTCGGTAGCTGCTGAACCTCCCTGGTGCtcacaatagaaaaaaaaaatcgcttttatgaaattaaaatgtaatttaaataccgctatttaaaaaaaaaaaaaaaaaaatggagtcagatataaatataaaatataaatataacacactaaagaatgaattaaaaaacaataatagttGGTGCTCTAATTCaaattcactttcttttttaaatataaaatagttgATTTTCTGTGTTATGGAGTccaaagattttgttttgttttgttttgttgtgaacAGATAGACTATTTCATACAAATCTGAACTATTTTCTGCAATGCCTTTGACAATCAGTCTGGTGTATAGGATTTTGTACCATTTTTTTTCAGCAGTTCGGTAGTGTAGGTTtactggatttttattttttatatacaagaaAAAATTGACAGATATTGCAGTTTGTAGGTTTGTTTGGAATATACTTTAGTTAGAAAGGTCTTTATTCCTCCTTCCCCAGAGCCAAGCATTACTTTTGCCTTTCTTCTCCACTGTTAAAACTACTTTTGAAAGCATTCCTTGACAAGAATTTTAATCTAACTACATGTAATGGTTAACATTTTTGAACAGTTCTATTTCCCTCTGTAATTCTTCAGTGTTTCTGAAGCTGACCCTTAAAATAGGGAAAGGTGAGAAGCTTTCATATTTAGAATGTAATAAGTATTCATACAAGTTCATTGAAAAGGAAATTGGTTGGATGCacatgttttgtaattgatgtatttgtagAAATGATTCATGCAAAGCCAAGTTCTGGTCAGACAGCTTTTACAAATGGGTCCAGTATTTGTAAATTGCAACAAGTCAAGCGTTATTAATAATAGGGGATTTCTTCTGTGTGGACATTATAAAATAACTTGCAAGCAAATGCAGGAGAGAGGCCTATAAGACTAGCGGTAAATTGATTTGATTATGTTAAGCATTTTTCCAGACTTGCACACTAATGACTTAATTGCCATTCAGTGTGGTATAGTAGCTTTACTTGAAACCAAGTTTTCCCCTTTTTTGCCTGAATATACATCATAGTGTGTAATACTGCCAGGAGTGATTGGTTGATCCAGTCAAACTCTACACATTCTTCAGCAAGTCCAGTGCAATATTGCCTGTTcagaataataccaaaaaatGTGTAGGACTGTATGAACTA

Function

GO: NA

KEGG:

id description
K09222 REST; RE1-silencing transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017797 True 6464 mRNA 0.42 3 23844922 23857827

Neighbor

gene id symbol gene type direction distance location
AMCG00017802 NA coding upstream 45676 23795799 ~ 23799246 (+)
AMCG00017801 NA coding upstream 51246 23781868 ~ 23793676 (+)
AMCG00017800 NA coding upstream 74256 23767371 ~ 23770666 (+)
AMCG00017803 abca1b coding upstream 96666 23713943 ~ 23748256 (+)
AMCG00017798 NA coding upstream 173255 23648208 ~ 23671667 (+)
AMCG00017799 polr2b,LOC102791558,LOC107750329 coding downstream 6055 23863882 ~ 23875075 (+)
AMCG00017810 NA coding downstream 36577 23894404 ~ 23909195 (+)
AMCG00017813 NA coding downstream 55853 23913680 ~ 23914171 (+)
AMCG00017809 NA coding downstream 85171 23942998 ~ 23978774 (+)
AMCG00017814 NA coding downstream 168366 24026193 ~ 24034874 (+)
G93241 NA non-coding upstream 24399 23818331 ~ 23820523 (+)
G93238 NA non-coding upstream 30501 23813846 ~ 23814421 (+)
G93237 NA non-coding upstream 32474 23810025 ~ 23812448 (+)
G93236 NA non-coding upstream 35014 23809307 ~ 23809908 (+)
G93231 NA non-coding upstream 79440 23759740 ~ 23765482 (+)
G93354 NA non-coding downstream 186351 24044178 ~ 24047768 (+)
G93454 NA non-coding downstream 768732 24626559 ~ 24628418 (+)
G93588 NA non-coding downstream 1090164 24947991 ~ 24949268 (+)
G93651 NA non-coding downstream 1451875 25309702 ~ 25312347 (+)
G93675 NA non-coding downstream 1550690 25408517 ~ 25409609 (+)
AMCG00017783 NA other upstream 515353 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 2994305 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 3022874 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3841793 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 4316629 19444172 ~ 19528293 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 250733 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 847443 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1192482 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3135064 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 3615054 27472881 ~ 27697379 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008188 rest coding NC_007125.7 CM002898.2 52418247 ~ 52433292 (-)
striped catfish (Pangasianodon hypophthalmus) G214977 NA non-coding NC_047607.1 CM018553.1 21620678 ~ 21621921 (-)
mexican tetra (Astyanax mexicanus) G187685 NA non-coding NC_035918.1 CM008321.1 6386926 ~ 6450250 (-)