AMCG00017801


Basic Information

Item Value
gene id AMCG00017801
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23781868 ~ 23793676 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017801
ATGGAAGAGACATCCACTTCAACAAGTGTTCAGAGTTGCAGTATGGAGCGCACAATGAGTGCCAAGAACCGTACAGTATATAAAGATCTGTGGCTGAAGGGGCAGCTGTGTGATGTGGTAATGATGGTGGAAGGCACTGCATTCAATGCCCACAAGATCATCTTGTGTGGCAGCAGCAGCTATTTCCGGCTGACACTGGGCCCATGCCAAACTATGACTAAAGATACAGTGTCAGCGGCCCACCGTTACATCCTGCGCCACTTTGAGCACTTGGTCGAGGCTTCCGATGAATTCCTGGAGCTCTCCCTGGACCAGCTGCTCAACATCATTGAGAAGGATGACCTCAATGTCAAGCAGGAGTATGTGCGGATGGCACTCATGGAATCACAGCACATTGCCAAAGTCAGGGACAACGAGCTGGTGAAACAGACCAACGAGTGCAAGGCCACAGTCATCAATGCGCTCAATGCCAGGAATGACTGCATCATGAATGGCCCCTCCGACTCTGACTTCCTCAAACTCATGACCCGGCCGCGGCTACCCTGTGACATCATGTTGTCAATTGGGGGCTGGAGTGTGGGCAACCCGACCAATGCCATGGAGGCGTATGATGCCAGGGCTGGCCGCTGGTTGAATGTCACCATCCCGGAGGAGAGCCCACGGGCGTATCACGGGGCCGCCTACCTCAATGGCTGGGTGTACTGCGTGGGCGGCTTTGACGGGTTGCACCGGCTGCAGAGTGTTGAGGCCTACAACCCGCTGACAAACAGCTGGCGCCTGATGCCCAGCATGTACAACCCACGCAGCAACTTTGGCATTGAGGTGGTGGACAACCTCCTGTTCGTGGTGGGCGGCTTCAATGGCTCAGCCACCACCCCCGATGTGGAGTACTATGACAGAGAGACCAATCAGTGGTTTGACACCGACGACATGGGCATCTTCCGCAGCGCACTCAGCTGCTGTGTGGTGCCAGGACTGCCCAACGTGGCCGACTACATCGCTCCCCGAGTTGCCCTGCTGCCCGGATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017801 True 1029 mRNA 0.56 5 23781868 23793676

Neighbor

gene id symbol gene type direction distance location
AMCG00017800 NA coding upstream 11202 23767371 ~ 23770666 (+)
AMCG00017803 abca1b coding upstream 33612 23713943 ~ 23748256 (+)
AMCG00017798 NA coding upstream 110201 23648208 ~ 23671667 (+)
AMCG00017793 NA coding upstream 149200 23627901 ~ 23632668 (+)
AMCG00017794 LOC103353869,LOC108275199,LOC100699015,LOC101470794 coding upstream 165905 23610238 ~ 23615963 (+)
AMCG00017802 NA coding downstream 2123 23795799 ~ 23799246 (+)
AMCG00017797 NA coding downstream 51246 23844922 ~ 23857827 (+)
AMCG00017799 polr2b,LOC102791558,LOC107750329 coding downstream 70206 23863882 ~ 23875075 (+)
AMCG00017810 NA coding downstream 100728 23894404 ~ 23909195 (+)
AMCG00017813 NA coding downstream 120004 23913680 ~ 23914171 (+)
G93231 NA non-coding upstream 16386 23759740 ~ 23765482 (+)
G93208 NA non-coding upstream 104776 23676800 ~ 23677092 (+)
G93207 LOC107571907,LOC107703852,LOC108427439 non-coding upstream 106317 23675250 ~ 23675551 (+)
G93131 NA non-coding upstream 340098 23441409 ~ 23441770 (+)
G93125 NA non-coding upstream 352713 23427732 ~ 23429155 (+)
G93236 NA non-coding downstream 15631 23809307 ~ 23809908 (+)
G93237 NA non-coding downstream 16349 23810025 ~ 23812448 (+)
G93238 NA non-coding downstream 20170 23813846 ~ 23814421 (+)
G93241 NA non-coding downstream 24655 23818331 ~ 23820523 (+)
G93354 NA non-coding downstream 250502 24044178 ~ 24047768 (+)
AMCG00017783 NA other upstream 452299 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 2931251 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 2959820 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3778739 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 4253575 19444172 ~ 19528293 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 314884 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 911594 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1256633 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3199215 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 3679205 27472881 ~ 27697379 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011233 klhl10b.1 coding NC_007128.7 CM002901.2 7510220 ~ 7521586 (+)
grasscarp (Ctenopharyngodon idella) CI01053075_00001094_00001849 NA coding CI01053075 null 1094 ~ 1904 (+)