AMCG00017802


Basic Information

Item Value
gene id AMCG00017802
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23795799 ~ 23799246 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017802
ATGTTGGGCTGTTTTAAAGACAAAGTCGGTGAGGTTTTACTACCAGGAgatattttttcctttgaatTACCCGATTCTGAAAGTAAACCAGAAAAACTCATATGCGGACCCGGGCTACGGCGCAATGGAGACGAAGTCCTCGTCTGTAAAAGCGGCATTTTGCGCCACAAGGAGACTAATCTATACTGGATAGATTCTCAGCAAAGACGGGTCAAATGTTTCTCTCTTCACTTTCAGTATGTCCCAGCAAAGGGCGATAGTGTGATTGGGATTGTGACTGCAAAGTCAGGCGATGTGTTCAAGGTTGACGTGGGAGGGAGTGAGCAGGCCTCTCTCTCTTACCTGGCTTTTGAGGGAGCAACAAAACGAAACCGACCTAATGTTCAGGTAACTGCTGCTGGAGTTTCCATAGTGAACAGGCAAACCATCCCTAATTGTCTACTTTTTTGTACTCCTGTGTTGGGTGGGTGGTTGGACGGTGCCGATGATTTTAGCAATTTGTTAATGATGTTTTCCAAGATCTGTGATCAGTGTCATCCTGTGGAAATATCCCATCAGGTTGGAGACCTGGTGTACTCCCAGTTTATAATCGCTAATAAAGACATGGAGCCGGAGCTGGTTTGCATCGACAGCTGTGGCCGTGCCAATGGGATGGGGGTGTTCGGGGCTGGAGGGCTTCTCTTCAAGGTGTCTCTGGGACTGGTGCGGAGGCTTCTCGCACCGCAGAGTGAAATCGTGAAGGATCTGGAGAAGACTTTCCCCTTCGAGATGGTCATCGGCATGAACGGGCGGATCTGGGTGAGAGCCAAGAACACGCAGCAGACTCTAATCATTGCCAACCTTCTGGAGAGCTGTGAAAACATGGCGGCGCAGCAACGGAAAACGCTGTTCAGGAGAGTGGCAGAAAACACTCTGTGA

Function

GO: NA

KEGG:

id description
K03681 RRP40, EXOSC3; exosome complex component RRP40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017802 True 918 mRNA 0.49 4 23795799 23799246

Neighbor

gene id symbol gene type direction distance location
AMCG00017801 NA coding upstream 2123 23781868 ~ 23793676 (+)
AMCG00017800 NA coding upstream 25133 23767371 ~ 23770666 (+)
AMCG00017803 abca1b coding upstream 47543 23713943 ~ 23748256 (+)
AMCG00017798 NA coding upstream 124132 23648208 ~ 23671667 (+)
AMCG00017793 NA coding upstream 163131 23627901 ~ 23632668 (+)
AMCG00017797 NA coding downstream 45676 23844922 ~ 23857827 (+)
AMCG00017799 polr2b,LOC102791558,LOC107750329 coding downstream 64636 23863882 ~ 23875075 (+)
AMCG00017810 NA coding downstream 95158 23894404 ~ 23909195 (+)
AMCG00017813 NA coding downstream 114434 23913680 ~ 23914171 (+)
AMCG00017809 NA coding downstream 143752 23942998 ~ 23978774 (+)
G93231 NA non-coding upstream 30317 23759740 ~ 23765482 (+)
G93208 NA non-coding upstream 118707 23676800 ~ 23677092 (+)
G93207 LOC107571907,LOC107703852,LOC108427439 non-coding upstream 120248 23675250 ~ 23675551 (+)
G93131 NA non-coding upstream 354029 23441409 ~ 23441770 (+)
G93125 NA non-coding upstream 366644 23427732 ~ 23429155 (+)
G93236 NA non-coding downstream 10061 23809307 ~ 23809908 (+)
G93237 NA non-coding downstream 10779 23810025 ~ 23812448 (+)
G93238 NA non-coding downstream 14600 23813846 ~ 23814421 (+)
G93241 NA non-coding downstream 19085 23818331 ~ 23820523 (+)
G93354 NA non-coding downstream 244932 24044178 ~ 24047768 (+)
AMCG00017783 NA other upstream 466230 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 2945182 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 2973751 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3792670 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 4267506 19444172 ~ 19528293 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 309314 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 906024 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1251063 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3193645 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 3673635 27472881 ~ 27697379 (+)

Expression


Co-expression Network