AMCG00017803 (abca1b)


Basic Information

Item Value
gene id AMCG00017803
gene name abca1b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23713943 ~ 23748256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017803
ATGTCCATCTTTACTCAGCTGGGCTTACTCCTGTGGAAGAACTTTACCTACCGAAAAAGGCAAACACTCCAGCTGCTGATCGAGATCGCATGGCCACTCTTCATATTTTTCATCTTGATTTCTGTGCGGCTCTCATATCCTCCATATGAGCAACATGAATGTCACTTTCCCAATAAAGCCATGCCATCCGCGGGGACGCTGCCATGGGTTCAGGGGATCATCTGCAATGCCAACAACCCCTGCTTCCGCTACCCCACGCCTGGAGAATCCCCCGGAGCGGTGGGCAACTTCAACAAGTCCATAATCTCTCGCCTCTTTTTGGACGCCAAGAAAATCCTGCTGTACAGTCAGAATGACCAGAGTCTCAGTGGTTTCAAAGACCTCATTCAGGCACTGAAGAACATGAAGAATTCCTCTTCAGgtttcaaattgaaagacttCCTCCTCAATAACGAGACATTATCATCATTCCTGCAGAACAACGCTTCACTCTCAGAATATGCTGTCAAGGAGATAATGGAAGCCGATGTGAACTTGGAACAAgtgCTGGTAAGAGGATTTGGTGTTCACTTGAGAGACTTGTGCAACTCATCCAAACTGGGAGACTTTGTCCGCATATCGGACAACATCGTGTTAATGCAATCTCAGACAATCATCTGCACGTCCTCTAAGGAATGGCTCAACCAAGCAGAGGAGCACTTCCTGTCCAACCTGGATTTTCTAAAGCCTATACGGAAAACGGTGAACACTGATCCTCATGCTGTTCAGGAGGTTTCAGAAGCTACAGACAACCTGCTTAACAGTCTGGCAGCCCTGGCTGTTGAGCTTGGAGGAATGAAAAGCTGGAGTGACATGAGAAATGAAATTTTATTTCTGACTGAGAATGCCACCGGGTCCCCCAGCCACATGTACCAGGCTGTGTCCAGGATCGTGTGTGGACATCCAGAGGGAGGAGGCCTGAAAATTAAATCCCTCAACTGGTATGAGGACAACAACTATAAAGCCCTGtttggcaacaacaacaacaacaacagcgaGGATGAAACCGTCCTCTATGACCACACATCCACTCCCTACTGCAATGACATGATGAAGAATCTGGAATCCAGCCCCATCTCTAGAATGATCTGGAGGGCTCTGAAGCCACTGCTTATGGGCAAGATCCTGTACACTCCAGACACCCCTGCCACACAGAAGATCATCAAAGAGgttAACAAGACGTTTCAGGAACTGGGTGTATTTAGGGATCTGGGAGGCATGTGGGAAGAGCTGAAACCCAAGATCTGGAATTTCATGGAGAACAGCGATGAGATGGGTCTAGTTCGGACTCTTCTCCAGAACAACGTGAGTGCCAGCTTCTTCAACTCCCAGTTAGCCAATACCAGTTTGACAGTGGAAGAGGTTTCAAGTTTCTTATCCAAGCAGTCGGAAGACTCCCGTCCTCCAGGAACAGCATACACATGGAGAGATGCTTACAATGAGACCGACCAGGCAGTTATGACCATATCGCGTTTCATGGAGtgtgttAATTTAGATAAGCTGGAGCCTGTAGCGACCGAGGAAAGACTCATAAACAAATCCATGAGACTGCTGGACGACAGGAAGTTCTGGGCCGGGATCGTATTTCCAAGCATGGGGTCCAACAGCGCCGAGCTGCCGTCTAAAGTGGACTACAAGATTCGCATGGACATTGACAATGTGGAGAGGACCAACAAGATCAAAGACGGGTACTGGGATCCGGGTCCCAGAGCTGACCCCTTTGAGGACATGCGCTACATCTGGGGAGGGTTTGCCTATCTGCAGGACGTCATCGAGCAGGGTATCATTAGAGCTGTAACCGGCACTAAGGAAAAGATTGGGGTTTACATCCAGCAGATGCCTTACCCTTGCTATGTGGATGACATATTCCTGCGTGTGATGAGCCGCTCCCTACCACTGTTCATGACCCTGGCGTGGATTTACTCGGTGGCCATCATCATCAAAGGCATCGTGTACGAGAAGGAGGCCCGCCTCAAGGAGACCATGAGGATTATGGGACTGGATAACGGTATCCTGTGGTTCAGCTGGTTCATCAGCAGCCTCATCCCTCTACTCATCAGCGCCTCATTCCTTGTACTCATTCTAAAGAAGGGAAACCTGCTGCCCTACAGTGACCCCGGTGTGGTGTTCCTCTTCCTGGCCTCCTTTGCGGTAGTGACGATCATGCAGTGTTTCCTCATCAGCACCTTTTTCTCCCGTGCCAACTTGGCCGCAGCCTGCGGGGGTATCATCTACTTCACCCTCTACCTGCCCTACGTCCTGTGTGTGGCCTGGCAAGACTACGTGGGTTTCACAGTGAAAGTCATTGCTAGCTTGCTGTCACCAGTGGCATTTGGGTTTGGCTGCGAGTATTTTGCACTGTTTGAGGAGCAGGGGGTGGGCATTCAGTGGAACAACCTCGTCTCAAGCCCCCTGGAGGAAGACAACTACAACCTCACTACCTCCATCGCCATCATGTATTTCGATGCCTTCCTCTATGGAGTGATGACCTGGTACATTGAAACTGTGTTCCCAGGTCAGTATGGAATTCCCAGACCCTGGTATTTCCCTTTTACAAAGTCCTACTGGTTTGGTGAAACTCGGAACAAGAAGCATCACTCTCCATCGAGAAGCAAAGAAAATTCAGAagTTTGCATTGAAGAAGAGCCAGCCCATCTACAGCCTGGCGTGTTCATCCAGGACCTGGTCAAGGTGTACCGTGATGGGAACAAGGTGGCAGTGGACGGCCTGACTCTGGGCTTCTATGAAGGACACATCACCTCATTTCTCGGACACAATGGAGCTGGGAAAACCACCACTATgTCAATCCTAACTGGACTGTTCCCTCCAACCTCTGGTACTGCTTACATCTTGGGAAAAGACATCCGCTCTGAACTCAGCTCCATCAGGAAGAACCTTGGAGTGTGTCCTCAGCACAATGTTCTCTTTGACCAGTTGACGGTGGAGGAGCATGTCTGGTTCTATGCCCGTCTGAAGGGACTGTCGGAGAAGGACGTGAAGGCAGAAATGGAGCAGATTGTCTTGGATGTTGGCCTGCCTCACAAACGCAAGGCGAAGACGAGTCAGCTCTCTGGTGGTATGCAGAGGAAACTGTCCGTAGCTTTGGCATTTGTCGGAGGGTCCAAGGTTGTCATTCTGGATGAACCTACAGCCGGAGTTGACCCTTATGCCCGCAGAGGCATTTGGGACCTCCTTCTGAAGTATCGCCAAGGCCGCACCATCATCTTATCAACCCACCATATGGACGAAGCTGATATTCTGGGTGACAGGATCGCCATAATTTCTCATGGCAagttgtgctgtgttgggtcttCGCTCTTCTTGAAGAATCAGTTAGGAACAGGCTATTACCTGACCCTTGTGAAGAAAGACCTGGATTCTTCTCTGAGCTCCTgcaggaacagcagcagcacggTGTCTTACATCAAAAAGGAGGACAGCGTTTCCCAGAGCAGTTCTGATGCGGGACTTGGCAGTGACCATGAAAGCGACACAACCACCATTGATGTGTCCCTCGTCTCCAATGTGATTCTGAAGCACGTGCCCAAGGCTCGGCTGGTGGAGGACTTTGGGCATGAGCTGACCTATGTCCTGCCCTACGAGTCAGCCAAGGACGGGGCATTTGTGGAGCTGTTCCATGAGGTTGACGACCGACTTTCTGACTTGGGAATCTCGAGCTACGGCGTCTCGGACACCACACTGGAAGAGATATTCCTTAAAGTGGCTAAAGACAGTGGAGTTGACACAGAGATTTCAGATGGCACCATCCCCATTCGCAGGAATCGCCGACACGCTTTTGGGGACAGACAGAGCTGCCTGAGGCCCTTCACAGAGGACGACGTGTATTGCAATGACTCGGAGGGTGACCCAGAATCCAGAGAGACAGACTGGCTCAGTGGGATGGATGGGAAAGGCTCGTATCAAGTGAAAGGCTGGAGTCTGATAAGACAGCAGTTTGTCGCATTGCTGTGGAAAAGATTTCTGTACGCACGCCGTTCCAGGAAGGGATTCTTTGCCCAGattgtgctGCCAGCTGTGTTTGTATGCATCGCCCTAGTCTTCAGCCTCATTGTCCCTCCTTTTGGAAAATATCCCAGCTTGGAGCTGCAGCCGTGGATGTACGACGAGCAATTCACGTTCATAAGCAATGATGCCGCTGATGATGTCAACATACAGAAGTTATACGGAGCTCTGACCAGCAGTCCCGGCTTCGGCACTCGATGCATGAAAGGAGATCCTATTCCAGACACTCCGTGCTCGGTGGGGGATGACCACTGGACATCCCAGGATGTCCCGGAGAGCGTTCAGGATCTCTTTCTCAACGGGAACTGGACAATGGAGaacccctctccctcctgcGAGTGCAGCAGCGAGGGTCGGAAGAAAATGCTCCCAGAGTGTCCTGCAGGAGCTGGTGGACTGCCCCCGCTACAGattaaattaaacacaacagaTATTTTGCAAAACCTCACAGGCCGGAATATATCTGACTACCTGGTGAAAACGTATGCACAAATCATCGGGAAAAGcttGAAGAACAAGATTTGGGTGAATGAATTCAgGTACGGTGGATTTTCTTTGGGTGCAAGCAGTTCTCAGGTCCTCCCTCCAGCAGATGAAATAAATGATGCCATACTTCGCATCAGAGAGCTCCTCAGCCTGAAGAAGGTACACTTTCCACCAGTTCTTTCCCCACTGTGGAAGACCAGAGGTCCAGTTCGttatttacagtgtgtgtttgtgttccttcTCTATCAGGGGACTGCATCAGACCGGTTCTTGGGAAGCTTATCAATCTTCATGAAAGGACTAGATACGAAAGATAATGTCAAGATCTGGTTTAATAACAAAGGGTGGCACAGCATTGGAGCATTCCTCAATGTCATGAACAATGGTATTCTTCGTGCCAATTTACCGGAGGGGAAAAATCCCAGCGAGTACGGCATCTCGGCCTTTAACCACCCCCTGAACCTTACGAAGGAACAGCTTTCCCAAGTGGCGCTGATGACGACCTCCGTGGACGTGCTGGTGTCGATCTGTGTGATATTTGCCATGTCCTTCGTGCCGGCCAGCTTCGTGGTGTTTCTGATTCATGAGAGAGTGAGCAAGTCCAAACACATGCAATTCATCAGTGGGGTTCAGCCCGGACTCTACTGGTTGGCCAATTTTGTCTGGGATATGtgcaACTACATAGTTCCTGCAACTCTCgtcatcattatttttgtctgcTTCCAACAAAAATCCTACGTTTCTGCGGCCAACCTGCCTGTGCTGGCTCTTCTGCTGCTTCTCTATGgatgggCAATTACCCCCTTGATGTATCctgcctccttcttcttcaagatcccCAGCACTGCCTATGTGGTTCTCACCAGCGTTAATCTCTTCATCGGTATTAACGGCAGTGTTTCCACTTTTGTGCTGGAACTTTTTACCAATCACAACCTGAGCAGTGTCAACGAGATCCTGAAGTCCGTGTTCCTCATCTTCCCCCATTTCTGCCTGGGACGGGGCCTGATTGACATGGTGAAAAACCAAGCTATGGCTGACGCCCTGGAAAGATTTGGTGAGAATCGCTTCAGATCGCCGTTGTCCTGGGACATGGTGGGCAGAAACCTCTTTGCCTTGGCAGTGGAGGGCCTGGTGTTCTTCTGCATCACGTTGCTCATCCAGTACAGATTCTGCATAAAGCCAAGGTCAGGAACTCCTAACCTGCAGCCGATCAgcgatgaagatgaagatgtggccagagagaggcagaggatTGTGAGTGGCGGGGGGCAGACAGACATTCTGGAACTCAGAGAGCTGACGAAGGTGTACAGAATGAAGCGCAAGCCAGCTGTGGACCGTCTCTGTGTGGGAATTCCTCCAGGAGAGTGTTTCGGCCTGCTTGGTGTAAACGGTGCCGGAAAGACCACCACGTTCATGATGCTGACCGGAGACACTACTGTATCTAGAGGAGAGGCCTTCCTGAATGGAAAGAGTGTCCTTCGAGAGATCCACGAGGTGCATCAGAACATGGGCTACTGTCCTCAGTTTGATGCAATTAATGAGCTGCTGACTGGGAGGGAGCACCTGGAGTTCTATGCGATTTTACGTGGTGTTCCAGAGAAGGAAGTTTGCAAGGTTGCTGAATGGGGGGTCCGTAAATTGGGCCTCGTGAAATACATGGACAAACGCGCTGGGAGTTACAGTGGAGGGAACATGCGCAAGCTGTCCACGGCCATGTCTCTGATTGGAGGACCGCCTGTGGTGTTCCTGGATGAGCCCACCACTGGAATGGATCCCAAAGCTCGCAGGGCCCTCTGGAACTGCATCCTTAGCATCATTAAAGAAGGGCGGTCTGTAGTGCTCACCTCACACAGGtacacattttgttctcaaaatgTACTTCATTCTGACAAGGTTTTTATGGAAGAATGTGAAGCACTCTGCACCAGAATGGCTATTATGGTTAATGGTAGATTCCGGTGCCTAGGCAGTgtccaacatttaaaaaacagGTTTGGAGACGGATACACCATCATCCTGCGAGTGGCAGGGCCCAGTCCCAACCTGCAGCCCGTGATGAAGTTCATCGAGAGCGAGCTCCCAGGCAGCGTGCTGAAGGAGAAACACAGGAATATGCTGCAGTACCAGCTGCCCTCTTCCCACACCTCCCTCGCCAGGATATTCAGCATCTTGTCCAAGAACAAGAACCAGCTCAGGATAGAGGACTATTCTGTGTCTCAGACCACTCTTGACCAAgtatttgttaattttgccAAGGACCAAAGTGATGAAGACCACTCAAAAGACATTTCTTTGAACAGGAAAGATGCTGTGCTAAATACCTTGCATCTTAATAACTTTTTGAAGGACGAAAAGGTGAAGGAAAGCTACGTgtga

Function

symbol description
abca1b Predicted to enable ATPase-coupled transmembrane transporter activity; phosphatidylcholine floppase activity; and phosphatidylserine floppase activity. Predicted to be involved in phospholipid efflux. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including hypochord; mesoderm; notochord; solid lens vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hypolipoproteinemia (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human ABCA1 (ATP binding cassette subfamily A member 1).

NR:

description
ATP-binding cassette, sub-family A (ABC1), member 1B

GO: NA

KEGG:

id description
K05641 ABCA1; ATP-binding cassette, subfamily A (ABC1), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017803 True 6930 mRNA 0.50 48 23713943 23748256

Neighbor

gene id symbol gene type direction distance location
AMCG00017798 NA coding upstream 42276 23648208 ~ 23671667 (+)
AMCG00017793 NA coding upstream 81275 23627901 ~ 23632668 (+)
AMCG00017794 LOC103353869,LOC108275199,LOC100699015,LOC101470794 coding upstream 97980 23610238 ~ 23615963 (+)
AMCG00017784 NA coding upstream 270026 23439746 ~ 23443917 (+)
AMCG00017785 rps6,LOC106609995,LOC106602804 coding upstream 361665 23348358 ~ 23352278 (+)
AMCG00017800 NA coding downstream 19115 23767371 ~ 23770666 (+)
AMCG00017801 NA coding downstream 33612 23781868 ~ 23793676 (+)
AMCG00017802 NA coding downstream 47543 23795799 ~ 23799246 (+)
AMCG00017797 NA coding downstream 96666 23844922 ~ 23857827 (+)
AMCG00017799 polr2b,LOC102791558,LOC107750329 coding downstream 115626 23863882 ~ 23875075 (+)
G93208 NA non-coding upstream 36851 23676800 ~ 23677092 (+)
G93207 LOC107571907,LOC107703852,LOC108427439 non-coding upstream 38392 23675250 ~ 23675551 (+)
G93131 NA non-coding upstream 272173 23441409 ~ 23441770 (+)
G93125 NA non-coding upstream 284788 23427732 ~ 23429155 (+)
G93102 NA non-coding upstream 382971 23330734 ~ 23330972 (+)
G93231 NA non-coding downstream 11484 23759740 ~ 23765482 (+)
G93236 NA non-coding downstream 61051 23809307 ~ 23809908 (+)
G93237 NA non-coding downstream 61769 23810025 ~ 23812448 (+)
G93238 NA non-coding downstream 65590 23813846 ~ 23814421 (+)
G93241 NA non-coding downstream 70075 23818331 ~ 23820523 (+)
AMCG00017783 NA other upstream 384374 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 2863326 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 2891895 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3710814 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 4185650 19444172 ~ 19528293 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 360304 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 957014 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1302053 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3244635 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 3724625 27472881 ~ 27697379 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000675 abca1a coding NC_007112.7 CM002885.2 52560549 ~ 52628407 (+)
grasscarp (Ctenopharyngodon idella) G435 NA unknown CI01000000 null 1425121 ~ 1432854 (+)