AMCG00017812


Basic Information

Item Value
gene id AMCG00017812
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23885184 ~ 23893945 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017812
TTTGACGTCATATTCCGTCGACAGTCAAATCATAAGGCATAAGGTTTTATGCAGTGCTTTGGCAGTATACAACACGACTAGTGATGGCAGCGCCTTTGTGGACTTGTAAAAACTATGGGTGTCTGTTGAGGAAATGGCAGCTTTCGAAGATGATGTGTGGTCCCTTCTCTCTTGAccacagaaataatacaattaaagtcCCCCCTCGATCTTTGCCTGTCACCCGACCTCTATTCAGTTGTTCGACTGGACTGGCGTGGAGAGGAGTCCTACAGCAGAGAAGGACTTTGGTTTCGGCCTCCATGCTGTCAGCAGCCTCGGTTGCCACAGACAGCCCTGGCTGGTACGAGAGCATTGTGGACTCTGCGCCCATCCACATGACCGAGGAGCTCCTGGTGGCAGTGCAGCAGGCGACAGGGCTGCCATGGTGGGCCAGCGTGGTCTGCACTACCGTGGCTTTGAGAACAGTAATTACACTCCCCCTGGGCGCCTACCAAATGGCTGTCATAGCAAAGATTGAGGCTTTGCAATCTGAAATCGCAGAGCTCGCCAAGCGACTAAGATACGAGGTCTCAGTCCGGGCCAAACAGGTGGGATTCCATTACAGGAAGAACCTGCGGCGCATTGTGTCTGAGCTGTACGTCCGGGACAACTGCCACCCTTTCAAAGCCAGCCTCCTCATCTGGGTCCAGATCCCCATGTGGGTGTTCCTCTCTCTCGCCCTGCGCAACATGAGTGTGGGATTGACGGACTCGGCGCGAGAGTTCGCAGCTGGGGGTGTCCTGTGGTTTCCTGATCTCACGGTGCCTGATTCAACTTGGATTATGCCCATTTCTGTAGGACTGATCAACCTGATCATTGTGGAGATTTTCTCATTGCGGAAAACTGAAATTACCAAGTTCCAGAAGTACGCCACCAACTTCATCCGGGGGATTTCACTACTGATGATCCCAATCGCTGCCTCCGTGCCCTCTTCGATGGCTCTGTACTGGCTGACCTCCAGCTGCGTCGGCCTGGGACACAATTTACTGTTGCGCTCCCCTCGATTCCGCCAGCTCTGCAGGATCCCCCCCACCCAGGCCGACTCACAGACTCCGTATAGAGACATTGCCTCGGCCTTTATTGGCAAATACTTCAAATAGGGTTCGCACAAAAGAAATCACTGGACTAATCGCAAATACCTTTTTTCTTGTACTTGTGAAGAGGAATTTTTTCATTATCGTTATTGTGTCAATCTACACTCCCCTCAA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0051205 protein insertion into membrane biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008009 chemokine activity molecular_function

KEGG:

id description
K17797 COX18; mitochondrial inner membrane protein COX18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017812 True 1250 mRNA 0.52 7 23885184 23893945

Neighbor

gene id symbol gene type direction distance location
AMCG00017811 NA coding downstream 730 23875123 ~ 23884454 (-)
AMCG00017804 NA coding downstream 21528 23857838 ~ 23863656 (-)
AMCG00017806 LOC108277608 coding downstream 45021 23821734 ~ 23840163 (-)
AMCG00017808 NA coding downstream 72736 23795913 ~ 23812448 (-)
AMCG00017805 NA coding downstream 124947 23750371 ~ 23760237 (-)
AMCG00017815 tmem33,LOC107741195 coding upstream 154877 24048822 ~ 24053932 (-)
AMCG00017818 limch1 coding upstream 225532 24119477 ~ 24253084 (-)
AMCG00017824 NA coding upstream 546591 24440536 ~ 24568029 (-)
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding upstream 697072 24591017 ~ 24596789 (-)
AMCG00017828 rhoh coding upstream 717484 24611429 ~ 24612007 (-)
G93173 NA non-coding downstream 345064 23444211 ~ 23540120 (-)
G93165 NA non-coding downstream 555440 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 588938 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 589815 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 594503 23290332 ~ 23290681 (-)
G93324 NA non-coding upstream 13630 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 140751 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 150249 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 407475 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 611437 24505382 ~ 24505610 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 563230 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3526559 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4465828 19412987 ~ 19419356 (-)
G92436 NA other downstream 5422008 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 6095435 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 370734 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1052150 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1103599 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2051196 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2118543 26012488 ~ 26015942 (-)

Expression


Co-expression Network