AMCG00017815 (tmem33,LOC107741195)


Basic Information

Item Value
gene id AMCG00017815
gene name tmem33,LOC107741195
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24048822 ~ 24053932 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017815
TGGAGAGCAAGGCAATACTGCACATCAGTCCTGTTGAAGGAAGTAAACATTGTACATTAGATTGCTGGTCCTGTAACCTGTGATTCTATACACAGAGAAAGGTGTTCCTTAATGTGTGCatcatgcatttgtttgcttttcttgtatGTTTGAGATTCTTCCTGGCATTTATTTCAGAACACCTGTCACACACCTACAATGCACAGTAGACATATCGCACATCTGCATCTTttagattacaaaataaagtatttgccATTCCATAGGGTCACATGCACGTGTTTCTGAAGTTTTACAGTTTGGGTTTTTAAGGTGAAGGAGAGATTCAGAGATGGCCGATACGGAAAACAGGAGTACTCCCCCTCAGGGTGGGCCCATGCTGTTCATGTTGAGCAACAAATTGGAAACTGCTATGTGGCTCTCCCGGCTCTTCACCGTATACTGCTCCATTTTGTTTATCTTGCCAGTTTTGGGGATACAGGAGGCTGCTAATTTCTATCAGCGTGCCTTGTTGGCCAATGCTCTGACCAGTGCTCTCCGGCTACACCAAAGGCTACCTCACTTCCAGCTGAGCAGAGCATTCCTCACCCAGGCCTTGCAAGAAGACAGCTGCCATTATCTGTTGTATTCCCTAATATTAGTGAACTCCTATCCAGTTACAATGAGTATATTCCCAGTCTTCCTGTTTTCATTGCTTCATGCAACAACCTACACAAAGAAAGTTCTTGATGCAATGGGTCCCACAAGTTTGGCCTTTGTGAGGAACTTTCTGGACAAGCTGACGGCAAACCAACAGAATATCCTCAAATTTATTGCCTGCAATGAAATTTTCTTGATGCCAGCTACAGTGTTCATGCTTTTCAGTAACCAAGGCAGCTTGCTCCAGCCGTTCCTTTACTACAGGTTTCTCACCCTCCGTTACTCCTCTCGGAGAAACCCCTACTGTCGGACTCTGTTCACAGAGCTTAGGATCCTACTTGAACATCTCGTAATGAAGCCGGTCTGCCCTGCGTTTGTCCGAAGAATGTGTCTCAGCAGCATTGCCTTTGTTAGCCGCCTGGCGCCAACCGGAGCataaaattgacatttttggGAGCACTCTAGGGATTGACAAACACTTTGAATGTTTCCGGGAGCTGGTATAACTGCTACTTGCAGTCGTTTGCTCGTATGTTAACCCACAATGCACTGAACTTCAAAGTCTGGTCCGTTCTAAACCCACCTTCCCGGCATCTGTCACACTCCCATGTATTGAAATCTctattacagtttattttaagtgtcttaAGGTTGGTCAATAAAGTGCTGCAGTCCTGGTCATTCCTTCAGGATTCTTCGGTTTTAACCATTTATCAAGTTTTGGgtatgttttaaattctgtCTAGGATATTAAAAGGTATGTTGTcgcaattacattttctggatgcatccaaacattttatttgtgtgtacgTATATATGTGacaatgtatgtatacacacacacacacacatatatatatttattttcattgaatatttaaaattgagcagttgaaattgatattttttttaatgtatatcatTGAACTGTACTTTACCAGCCAGATTTGTTTGATATCTTCTATTCTCTTGATTTTTGTCTCCACGTATAATATTGAAATCATTATGCTTAATTTCTGTTAAAGTACTCTGAAGAAATTGAAACAGTTTGGAAGGTTCCAAGTAAATGTGATCTTAGTTGTACTATGCAtttaaaagctgtgttttaaCCATTTTTGTTAGATTTTCTTTAATATCAACATAATAGTAAGgaattgtaaaatacttaaatgtgaatattttatataagGAGGTCCCCTGTAAAGGTTCTCTATTCCAAGACAGTTTTGTACTGAACCCAAATCCAAAACGTCTGGTTTCAGCCACAGTTGTCAAGTCAGGAGAGGTCACTTGGGACCAAGTACGCGAGAAACTAAATATCTTCTGTGTTCCTTCATACATTCTTCACTTTAATAAGATAACCCTGAAATATTAGCCATTTAAAGCTTAGAAATGTGTGTGGTGATGAGTATTTACCTAGACAAGGGAAATATTAAGATGTTGTATTTCAATGTTGCTGTTGTAGCAGCTCTGCAGCGCTGGCATTGAGAGGAAACGCAAACGCTGTATTGGCGACTTACTCGATACCATCTTAATCTGCATCCGGTTACAGGACGCTTCAGAGGTACAGTCTTGATCccttattagaaaataaattggcATATCTGTTCATTCTTTTAAGGCATGCTTTATTCTTGTTAATGGCACTTTAATTTAGGTAGCCATGTCGTTTGTGTACAATAGAAACCTTGACCTCCAGGAACTAATTGTAGAAATTCTATGGAATCTAATTTATATTTCCTATTTaattgctgtatattttataacttCAAGATGGTTGTTTATCAGCATTTTAATGGACTATCTCTGCAGCTAGGATGTGGCTACATGAGCTACTgttgtacagtttattttgtgccCCTTCTTCGAGGTCTCTCctattctgtaaaatgttttatttcattacatgAACTTCCTATTTAAAGGATAATAAAGTATGTGGCTGGAAGTTTTCTCTTGTTTGCCAGGATCCTTACAAATCTCAACGTTTAACATCTTCCTATTTGAAAATTCATATTGATCAGTGTCTGGCCAACCTGCACAGCTGTGTTTCAAAATACTACACtttaatctgtattttctttatacattttagtgtACCTTACTTTGTGTTGCTTCATGATCTGTTCCTTTCTTAGATCACATTTATAGAAGTATTGCATTGCACCAGGCATGAGACCGGATAGATGATGTTTCAGAAAGCTCAGCAAAACCTGTGTGTAgttatattaaatgcattattttttatttaaattataaataaagtatagaTAGGCCTATATGCAagaaaggtgtgtgtgtatacagtgagggaaaa

Function

symbol description
tmem33 Acts upstream of or within regulation of sprouting angiogenesis; regulation of store-operated calcium channel activity; and regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in pronephros and trunk vasculature. Orthologous to human TMEM33 (transmembrane protein 33).

NR:

description
PREDICTED: transmembrane protein 33

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20724 TMEM33; transmembrane protein 33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017815 True 2959 mRNA 0.38 7 24048822 24053932

Neighbor

gene id symbol gene type direction distance location
AMCG00017812 NA coding downstream 154877 23885184 ~ 23893945 (-)
AMCG00017811 NA coding downstream 164368 23875123 ~ 23884454 (-)
AMCG00017804 NA coding downstream 185166 23857838 ~ 23863656 (-)
AMCG00017806 LOC108277608 coding downstream 208659 23821734 ~ 23840163 (-)
AMCG00017808 NA coding downstream 236374 23795913 ~ 23812448 (-)
AMCG00017818 limch1 coding upstream 65545 24119477 ~ 24253084 (-)
AMCG00017824 NA coding upstream 386604 24440536 ~ 24568029 (-)
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding upstream 537085 24591017 ~ 24596789 (-)
AMCG00017828 rhoh coding upstream 557497 24611429 ~ 24612007 (-)
AMCG00017826 NA coding upstream 574439 24628371 ~ 24649998 (-)
G93355 NA non-coding downstream 2453 24044194 ~ 24046369 (-)
G93350 NA non-coding downstream 11212 24034696 ~ 24037610 (-)
G93324 NA non-coding downstream 138143 23907575 ~ 23910679 (-)
G93173 NA non-coding downstream 508702 23444211 ~ 23540120 (-)
G93165 NA non-coding downstream 719078 23326525 ~ 23329744 (-)
G93399 NA non-coding upstream 247488 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 451450 24505382 ~ 24505610 (-)
G93500 NA non-coding upstream 623233 24677165 ~ 24679900 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding upstream 672006 24725938 ~ 24730222 (-)
G93576 NA non-coding upstream 868535 24922467 ~ 24927188 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 726868 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3690197 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4629466 19412987 ~ 19419356 (-)
G92436 NA other downstream 5585646 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 6259073 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 210747 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 892163 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 943612 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1891209 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1958556 26012488 ~ 26015942 (-)

Expression


Co-expression Network