AMCG00017817 (phox2b,LOC101065912,LOC106604546)


Basic Information

Item Value
gene id AMCG00017817
gene name phox2b,LOC101065912,LOC106604546
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24108560 ~ 24112110 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017817
ATGTATAAAATGGAGTATTCTTACCTCAATTCCTCTGCCTACGAGTCATGTATGGCTGGGATGGACACGTCGAGCCTGGCTTCAGCTTATGCGGACTTCAGCTCCTGCAGCCAGGCTAGTGGGTTTCAGTATAATCCTATAAGGACCACTTTTGGGGCCACATCAGGATGTCCTTCCCTCACTCCTGGATCTTGTAGCCTTGGGACGCTCAGAGACCACCAGAGCAGCCCGTACGCGGCAGTTCCCTACAAGCTCTTCACGGATCACGGGGGGCTGAACGAGAAGCGCAAGCAGAGGCGCATCCGGACCACCTTCACCAGCGCGCagctgaaggagctggagcGGGTGTTTGCGGAGACGCACTACCCGGACATCTACACCCGGGAGGAGCTGGCGCTGAAGATCGACCTCACGGAGGCCCGCGTCCAGGTCTGGTTCCAGAACCGGCGCGCGAAGTTCCGCAAGCAGGAGCgcgcggcggcggcggcggcggcggcggctaAGAGCGGCTCCTCGGGCAAGAAGGCCGACTCCCGGGAGGACGAGAGCAAGGAGCCCAAAGCCACCGACCCCGACAGCACGGGAGGGCCGGGCCCGAACCCCAACCCCGCCCCGAGCTGCGGCGGACCCAGCCCGACCGGTGGACAGGGCAGTGCGGGAGGCAACGGGGCCGTGGACCAGGTTAAATCATCTGGGGCAGGGGGGCTCGGTGGAGGCGCCCCAGGGCAGGGCTGGGCCTCTGCCCCTGGCACCATCACCTCCATCCCAGATTCATTAGGGGGACCGTTTGCCAGTGTACTGTCGTCTCTTCAAAGACCGAACGGAACCAAAGCTACTCTAGTGAAAAGCAGCATGTTCTGA
>TU116464
ccaaAGACTAAAGCTCATTATTGGCAACGTCTTTATGTTACAGTCACAACGACCACGGAGGATGACATTGTTTCCTATAGTTTGACCaacttttaatgatttaattctaaaaatccaaattaaacaaaactacatAAATATACTTCATTTGTTGATCAATGAGTTGACAGACTATGTTCATACTGTGTTGAGACTCTTCGACGACGCGCAAATAAAGTCTGATTTCAAGGTTTCCTACAACagggaaatgcattttttccaaacagatagatagatggaacatagtataatatttttttctttttagttaaGTTTTTTAacgtaatattttaaaacttttagaaactttaatgcacatttttatacACATCTTCTACACTGTATGTTCCCTACAAGCTCTTCACGGATCACGGGGGGCTGAACGAGAAGCGCAAGCAGAGGCGCATCCGGACCACCTTCACCAGCGCGCagctgaaggagctggagcGGGTGTTTGCGGAGACGCACTACCCGGACATCTACACCCGGGAGGAGCTGGCGCTGAAGATCGACCTCACGGAGGCCCGCGTCCAGGTCTGGTTCCAGAACCGGCGCGCGAAGTTCCGCAAGCAGGAGCgcgcggcggcggcggcggcggcggcggctaAGAGCGGCTCCTCGGGCAAGAAGGCCGACTCCCGGGAGGACGAGAGCAAGGAGCCCAAAGCCACCGACCCCGACAGCACGGGAGGGCCGGGCCCGAACCCCAACCCCGCCCCGAGCTGCGGCGGACCCAGCCCGACCGGTGGACAGGGCAGTGCGGGAGGCAACGGGGCCGTGGACCAGGTTAAATCATCTGGGGCAGGGGGGCTCGGTGGAGGCGCCCCAGGGCAGGGCTGGGCCTCTGCCCCTGGCACCATCACCTCCATCCCAGATTCATTAGGGGGACCGTTTGCCAGTGTACTGTCGTCTCTTCAAAGACCGAACGGAACCAAAGCTACTCTAGTGAAAAGCAGCATGTTCTGAATGGACAGAAACACTTTAAACACTCTCTTGCATTTTACCTGTCCACTGCTAACCTCTGCAAGAAGGATATGCCAAAATCCAGGAGTGCTTTCTCTGATCTCTTAACTAAGTAACAGTAATAGCAGGCTCGGTGAGCGGACCGGCCTGGATGTCACTGACACTGTTGCTCTGCTGGTCCAGAACCGCTGAGCGCAGAGGAGACTGAATCAGTGAACTCTCTGGACAGACTCACAGAAGAGActtgacctttttttgttttgtttgttaaggCCAGCACTTGCGTTGTTTTGTTGAGCATATTGGCTGTTGATCTACTGTTGCCAGACTGTATTTCCCGATAGATTTTTTACATCTGTAAAATAtgacattgttaatgttttgtttagacTTGCAATTTCGTCATCTACCTTCTGTATAAATCTCCAATCTCGCAGATGCGTTCACAATAGGAGTGTCAGTCACTCTGCTCAGAGTTGTATagattaatttttatttatttttggttgttattccttttaaaaacacaaccatCCTCCGCCAtgcattatgtaaaaatatCTATTGCCGTTCCCCAGGTTATGAAAgctttcatttcacattttgtaatattattttcccaAAGGCACAAACGGAAATTGTCAGTGTTGACAGGAATACGTAAacgtttttgtgtgtctttctaCAGCTGTGTGGTGTGACTCAATTGTATAGTGTTAATATAAGTATAAATTGTCTACTATAGTTGATCCTAGAAAAATGTTTACCCTCGTAGTTTATGGAGAGTCTTTATGAAGTTTTACAAGGTCATCACGGgttaatttctttttaaacaaaacagattcagacaatgtatttattttgttattatttgcatgttgtcttttgttttttctgtcgattttcaattttttgtgAGCATAATCCTCTCATGTTTTGTTCAGgatttgaaaattatttatatgtagtTATAATGAATGCGTATATTTAAGAAGGAAATATTTCTACATGTGCATATAGTTTTCCAAGAGTGTACCATTAACTTGGTTGTTGATAATAAAATGATAAGCAAACTTACACGAGGTCTATTTTCTAAAGAGCTCATTGTTTACAAGATGCTTCTGATTGAATCAATTGAATCAGTCCAAGCCACCTATAGTAAATGTAAGTGATAAGACGTAC

Function

symbol description
phox2b Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in brainstem development; enteric nervous system development; and positive regulation of transcription by RNA polymerase II. Located in chromatin and nucleoplasm. Implicated in congenital central hypoventilation syndrome.

NR:

description
PREDICTED: paired mesoderm homeobox protein 2B-like

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017817 False 861 mRNA 0.63 3 24108560 24110931
TU116464 True 2184 lncRNA 0.43 3 24109095 24112110

Neighbor

gene id symbol gene type direction distance location
AMCG00017816 NA coding upstream 66454 24041513 ~ 24042106 (+)
AMCG00017814 NA coding upstream 73686 24026193 ~ 24034874 (+)
AMCG00017809 NA coding upstream 129786 23942998 ~ 23978774 (+)
AMCG00017813 NA coding upstream 194389 23913680 ~ 23914171 (+)
AMCG00017810 NA coding upstream 199365 23894404 ~ 23909195 (+)
AMCG00017822 NA coding downstream 257619 24369729 ~ 24374577 (+)
AMCG00017820 apbb2 coding downstream 274165 24386275 ~ 24392205 (+)
AMCG00017821 apbb2b,apbb2 coding downstream 291743 24403853 ~ 24431531 (+)
AMCG00017823 rbm47,LOC107702361 coding downstream 455491 24567601 ~ 24577182 (+)
AMCG00017825 pds5a,LOC107757607 coding downstream 538990 24651100 ~ 24680134 (+)
G93354 NA non-coding upstream 60792 24044178 ~ 24047768 (+)
G93241 NA non-coding upstream 288037 23818331 ~ 23820523 (+)
G93238 NA non-coding upstream 294139 23813846 ~ 23814421 (+)
G93237 NA non-coding upstream 296112 23810025 ~ 23812448 (+)
G93236 NA non-coding upstream 298652 23809307 ~ 23809908 (+)
G93454 NA non-coding downstream 514449 24626559 ~ 24628418 (+)
G93588 NA non-coding downstream 835881 24947991 ~ 24949268 (+)
G93651 NA non-coding downstream 1197592 25309702 ~ 25312347 (+)
G93675 NA non-coding downstream 1296407 25408517 ~ 25409609 (+)
G93688 NA non-coding downstream 1405191 25517301 ~ 25517637 (+)
AMCG00017783 NA other upstream 778991 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 3257943 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 3286512 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 4105431 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 4580267 19444172 ~ 19528293 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 593160 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 938199 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 2880781 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 3360771 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 4519782 28631892 ~ 28646750 (+)

Expression


Co-expression Network