AMCG00017824


Basic Information

Item Value
gene id AMCG00017824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24440536 ~ 24568029 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017824
ATGCTTCTGTGTGTACATGACAAAAGCGTAGCCCCGGTTCTTGCCGTCAAAGTCCATCATCAGACGCATTTCGTAGATGCGCCCCACAGATTCAAACACCGGCACCAGCTCGTCCTCGTACACATCTCTGGGAATCTTCCCCACGAAAATCTCACAGCCACGGGGGGGAGAGGTCCCTTCCCAGCCAGGAGGAGGGCCATACTTACGCTGACCATTTTCCTGGACCATGCCGTAGCCGCTGCGCTCCATCAGGGCCAAGAGAGCACTTTCGTTTGGGGCTCCAGACACTCCTTCGGGGACCTTGCACGCAGATTTGTTAGAAGCGCTATTACTCATGGCAGCAGTGGAGTCTTCAGCTGTCATTATGCCACAACCATTCAATTTGTTCTGAGGCCTAGAGTAACAACATCTGACTCGCACAAATCACAGCCCTTAACCGAGGAGTGCTGGCAACACGTCCACAAACTGGCCACCGCTGGCAAGAAAAGCCAGTGTTTCTGTCAAGTCTACAGGACAGACGGGCTAAGTCTGGCTGGCAGTCGCCTACAGGTGGACACATATATAATGAAACTGAGCATACCTAGCTTCGAACACATTCGGCCAGAGACCAGAGACAATGGGAAAACACTAAAAATGCTAAAGTGTGTCATCAGCCCCAAGCTCCAAGGTGCTAAGCTCCCAATTGCTGTGGGCCCGAGGTACAGCCGTTACTGGAAACAGCAGCTTCTGAGCTACAGGGTCCAAGTTCACGCCATCACCGAAGGAGCCTTCCTGAGaGTGGCTCGATACACGTTCAAGGTCAAGCCGAgaacaaggaaaaacaatgaaTCAGCCTTTAGTCTCACACTGctATATCATATTCAAGCCTTTGAGATCCCAACAGTACCAGCTCTTGCCCAAGCTGGGCTGAAGCAGATGCTGACATTGAGGAGAGGAATGGAGTTCCAGTCTTACGGCCACCAGATTACACGAGAGATCTCACGCTTGGAAGGCATGACCATTTCAGAGAAGAAAGTCCCTCCTAAGAAGAACTCGGAGAGCTTTGGTTTCCCAGACCACATCTATGTCCACGCAGCCGCTGTTTTCCAGAGTTTTCATGTCGAGAAACCCATCGATCGAAGGCTAGTGAGCTACGGTAACAAGACCGGACTCCCTGTGTTGGAATCCAAAGATGAAAAAACTCAGCATTGTGCCTATGAGTTGGCATTCAATGCGCTGAAATATCAAGACTTACTGGAAGATATAATGATTGACAGCTGCCTTTACCTATCTCAGTCCATGCCTGATGAGCTCACAAGCCTGGTGGTCGTCATGCTGTATGATTTTCAAGATCGCAAATTCTTGCCGAGAAGCTGCCCCGACAGGGATGATGAGATTGAGGAAGTGAGGGAAGTGGAAAAGTGCCTTTTCAGATATAAAACTAAACTTGCTGCTTCCCTGGCCCGCTGTCGAATCAAACACGACCTTCTCACCATTGACTTCATGTTACCCGAATCTGTGAGGAAAAAGCAAGAGCGAGCCAGCTCTCTGCCACTGTACGGCTGGGTGAACACACTGAAAGCcagCCTTGAAGATGTGGTCAGCTCcttggagagagagggattttCAAAGGTAAAATCAATCACTGAACTTGAGGGATTAACTTTCTGTCAGGACCCTCACTGTCaggatttgttggtttttccaCCACACCTCAAAGCTGACCTTTACAGGACAAAGCTCTTAACCGACTACAAGCTTGTTATTCAGGACAAGTCTCGGAGTCTGGCTACTCACTCAGCGAAGGCCTTGTTGAACCCAGACCAAGATGTCATAATTGCGAACGCGGCGTCCGGCTTCACCATCGCCCACATGGCGGCTCTGACCAGCCAGAGCGCGGGTCGGGTGCTCGTGTGTGGGGTGAAGTCGCCAGCACTCAGAGAGGAGCTGCAGGACATCCTCTCACACATGGAGTGCAGGAATGTAAAACTTCTTCCCGAGAATTTTGCAGACATTGAACCTACAGACGTGCGACTCCAGAAGGCCAAAGTCATCCTGCTACTGCCTCCATGTTCAGCCTCGGGTGTCAGTAATCCAGTCGACTTCATCCTTAATGAAAGTGGAGACGCTGGTCTTCTCCGGGACCTTTCGCAAGGATCAATATCGGAAGAGAGGTTGAACGCCCTGGTCAAGCAGCAACTGCAAGACGTCTTGCTGGCTGTGAAATTTCTGAAGGTGCTTGCCGTGGTATACTGCACGTGTTCGCTGTATCCGGAGGAGAACGAGGAGGTGGTGAGGAGGGCCCTGGAGTACAAACCAGAGAGCAGCAAAGTGCAGCCTTATAGACTCAGTCCTCCACTGTGCTGCACGTCAGAGATAAATAACGCAAGGGACGGGTTTTTCAGAGTGGACCCATCTGAGAAGGCCAATGGCTGCTTTCTAGCAGTGCTGAAAAGAGAGGCCCCCTCTGGGACAGTTGCATCGAAGGATGTGCTGGCTCGTGCTGCAGCGAAGGGGCTGCTGGAAGGCATTGGATCAGAGAAGCACACAAAGAAGGAGAAGAGGCGGCCCAAAGTGGCAGTGCAGCCGGTCACGCCAGTCAACGAGACCCAGGCCCGCATCGCAGAGTTTCTCACAAGAGAGAGCGGAGAGAGTGCTGCTGTGGACGTCACAGAGAAGGCCTCCGCAAACCCCACGCTGAAGACCACAGAGAAGGGCATGGTGAAGGCCACGCCGGGGGCCACGGAGAAGACCACAGCAAAGTCCATGACGAAGGCCACGGTGAGCAGTTCCTCCTGGTACCGCGAGATGAGTAAGAGCAAGCAGACCCCCAAGTCCACGGTCTCCAGTTCTGTCTCTAATAGCATGAAGAAGAGCCTGCCTAAATTCTCCCCCACAAGCCGTTTTTATGAGCAGCGCATCTGTCCCCCAAAACCAAGACTGCAGGAGAAGATGTCTGTGCTGAAGCCAGTGGAGCTGGTGTTCCCCCCAGTCATGTTTCCCAGCTTCAGCCCCCTCATGAACAAGAGCAGGCCCCCCCCGCATCTCTCCGGCTTTCTCTGGAAGGGAGCCAGAGTCACCCAATACTCTCTCACTCCATCCACCGCCAGGGTCAGCAGATTTAGAGAGACGCTCCCTACAGCCGTGGTGTGGCACCCGCGACCGTGGCTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017824 True 3153 mRNA 0.53 18 24440536 24568029

Neighbor

gene id symbol gene type direction distance location
AMCG00017818 limch1 coding downstream 187452 24119477 ~ 24253084 (-)
AMCG00017815 tmem33,LOC107741195 coding downstream 386604 24048822 ~ 24053932 (-)
AMCG00017812 NA coding downstream 546591 23885184 ~ 23893945 (-)
AMCG00017811 NA coding downstream 556082 23875123 ~ 23884454 (-)
AMCG00017804 NA coding downstream 576880 23857838 ~ 23863656 (-)
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding upstream 22988 24591017 ~ 24596789 (-)
AMCG00017828 rhoh coding upstream 43400 24611429 ~ 24612007 (-)
AMCG00017826 NA coding upstream 60342 24628371 ~ 24649998 (-)
AMCG00017834 ube2kb,ube2k,LOC107088242,LOC108261162,LOC100708886,LOC105026169,LOC102229303 coding upstream 117274 24685303 ~ 24701049 (-)
AMCG00017833 lias,LOC102787141 coding upstream 148421 24716450 ~ 24725692 (-)
G93399 NA non-coding downstream 138556 24301420 ~ 24301980 (-)
G93355 NA non-coding downstream 394167 24044194 ~ 24046369 (-)
G93350 NA non-coding downstream 402926 24034696 ~ 24037610 (-)
G93324 NA non-coding downstream 529857 23907575 ~ 23910679 (-)
G93173 NA non-coding downstream 900416 23444211 ~ 23540120 (-)
G93500 NA non-coding upstream 109136 24677165 ~ 24679900 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding upstream 157909 24725938 ~ 24730222 (-)
G93576 NA non-coding upstream 354438 24922467 ~ 24927188 (-)
G93591 NA non-coding upstream 381939 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 538773 25106802 ~ 25107082 (-)
AMCG00017819 NA other downstream 169941 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1118582 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4081911 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5021180 19412987 ~ 19419356 (-)
G92436 NA other downstream 5977360 18462784 ~ 18463176 (-)
AMCG00017839 NA other upstream 378066 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 429515 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1377112 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1444459 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1535997 26104026 ~ 26107805 (-)

Expression


Co-expression Network