AMCG00017829 (smim14,LOC107700293,LOC107757606)


Basic Information

Item Value
gene id AMCG00017829
gene name smim14,LOC107700293,LOC107757606
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24705270 ~ 24715730 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017829
CATCTGCGTAACACGGCTAATGCGCTCACGGCCGCACGGCCTCTGCTTCAGCGAAACCCGGAAGTCAGGCAGGAAGTGACGTGGCTGTTGTATCCAAACACAGCAGCTGGCGCCGGACTCTGCGGGCTGGCGGCTCTGTTGTGGAGTGGTTTGTACCAGGAGCCGTTGTGGAATAAAGCAACAGGCATCCTTTCCAGTGACTCGGAAAACGTCAGAGCAATGGCCGAGGGAGGGTTTGACCCCTGTGAGTGCATCTGCTCCCATGAGCACGCCATGAGAAGACTGATCAATCTGctgaGACAGTCCCAGTCctactgcacagacacagaatgCCTTCAAgaaaTGCCCGGACCCAACCCCTCGAGCACAGGTGACCTCACAGTGCCAATGATCATGATGGCTTGGATGGTGATCGCCCTGGTCCTGTTTCTGCTCAGACCAGCCAGCATGAGAGGGCCGGGAACTGTGGGAAAACCATCCAGCCCACATAACCATGGAGGTGGACCCCCCGCTCCCCCAGTGGATTAGACCAAGTGGTTGACCAGTATTCAGCAGCCAAGGATTCGTACGACCAAAACAGTTACTGTGACCTGGATACACCTTTGAAATGTTTACTCATCTTCCTAAAGTCAATATTATACCAGTTCTTTTCTCACTAGCACCTGTAGCAGTTTCTTAAACTCTTCGGTTAACCCGAACACCTAGAATTGGGGGGATGATCAACAGGAATACCAGTTGGGCATCGGACTGGAAGGTGTGAGGGTTTCTGCATTCAACATTCCATGACAACCTTTTCCTCTGTATGCTGTAACCCCATCAGAGAACCATCCTTGTGGGCATGAAGAAAGGAGAATTGGACATTTATATTCCTCCAACAGAGTGTGCTGTATATCTCATTTGCTTGTGAAATTGCCAATTGTGCAGTAGCTTGACCTCTTGCCAAGAAGCTTATTCTGGTGGTAGAACTGCCTGTATAGGCTTGTATGCAAATCCGATGCATGTAAACATTGAACTGTAGCACGGAAGGTAGTAGGACACCTTGCCAACCTGACCCCCTACCAGCACCAAATGTCATTGTTAGACCATGCAAAATGCTTCATGAACACGTAAgcatataattgtataagtgtACAATTtgtcaatatgtatttatatatacatatataatttataaaaacagtGGTTTCAACTTTAAATGTTCAGCACAGAAGAAGCTGGAATATTGGTAAAACCTATATTAAGAGCCACACCTTTTCCTGGCTCTAAAACTGAGTGAAAAGACTgaagataacatttttaaaaagcagacacAACATGCTGAGAGTATCTTGTCTGTATTCAGGCCCGTGCCTCCCCTCTTTAAACAAAACAGCGGTGGAAAAAGGTGGCTTTGATTTTGAAACGGACGGCCACAAAGGCAGCGTGGGAAGTAGACGTATCTGGTGCATAGATTTGTTCTCGATTCCCTTTGGTACAAAGCACAGCGTAACCTTTCCAAGGTCACCGGTGGGGCGTTAAGAAACGGAGGTGAATTCGGCAGGTTTACTCAGTGCCTTCGCTTTCATATGGACTGGTGTCATTACTGCAATGCAAATGATGCCTTCCTTACTTTCTCAAAGTGTCTAgatgtatagtgtgtgtatgtctccACACATTGTATATACtctcttttccattttcatttccccccccccccaaaccagactttcatatttatttttttagtatttgCACGTGATGCGGTTATGGATGCTGTGCGGTACTCAACTGTAGGGTGTAAAGGTTGTCGGAATACTTTCCAACTTTTtgaaattctttatttttcttaaatataaccACCTTTGAGCATTATGTAGCTATTAAGATAAACATCGACTATAACATTGAATATATTGCTGGTCAGTAATCTGCCTGTATTGGGATTGTAGTTTGGAAAAGGTGTATCCTTGTATGGAAATAATTAGTCAATGTGTGCCCTTGGTTTCAAGATAACTAGCACTTTAAATAACTGCAGCCATTGTCCCTTTTACCCCCAACCAGGagatataaaattataaaatgtaatattacagTTGAACTATTTTACCTGCCAAGAGCTTCATGGTGTTACAAAAATGAATACCAGAATAGTTACAAAAATGAGGGAAGCATTTCTTGGCTTGTTTTCCCATTAACAATACAGTTACAGTTTGTTCATGATCTTCAGCTTTTTATACAGATGAGGGGAGCCAACTGTATATATGCCAAATTTgtggatttgtttaattttgtgtagAAATTCTATATGTAGTGCCATTTGTGGCGTTAACTAACACTGTATCGGGTTACAAAGGGCTTACACTATGCACTTTcataactataaaataaatatgagtaATACATTGCTGTGTTGTCTTGGTAAACATGTGAGGGATCCTGTGTGTATGGAAAGGGTGTGTGTTCTTGTGTAATAGGAGGGTATGCATATGAAGGTTTCTTTTCTACTCAGA
>TU116638
GCGCCGGACTCTGCGGGCTGGCGGCTCTGTTGTGGAGTGGCAACAGGCATCCTTTCCAGTGACTCGGAAAACGTCAGAGCAATGGCCGAGGGAGGGTTTGACCCCTGTGAGTGCATCTGCTCCCATGAGCACGCCATGAGAAGACTGATCAATCTGctgaGACAGTCCCAGTCctactgcacagacacagaatgCCTTCAAgaaaTGCCCGGACCCAACCCCTCGAGCACAGGTGACCTCACAGTGCCAATGATCATGATGGCTTGGATGGTGATCGCCCTGGTCCTGTTTCTGCTCAGACCAGCCAGCATGAGAGGGCCGGGAACTGTGGGAAAACCATCCAGCCCACATAACCATGGAGGTGGACCCCCCGCTCCCCCAGTGGATTAGACCAAGTGGTTGACCAGTATTCAGCAGCCAAGGATTCGTACGACCAAAACAGTTACTGTGACCTGGATACACCTTTGAAATGTTTACTCATCTTCCTAAAGTCAATATTATACCAGTTCTTTTCTCACTAGCACCTGTAGCAGTTTCTTAAACTCTTCGGTTAACCCGAACACCTAGAATTGGGGGGATGATCAACAGGAATACCAGTTGGGCATCGGACTGGAAGGTGTGAGGGTTTCTGCATTCAACATTCCATGACAACCTTTTCCTCTGTATGCTGTAACCCCATCAGAGAACCATCCTTGTGGGCATGAAGAAAGGAGAATTGGACATTTATATTCCTCCAACAGAGTGTGCTGTATATCTCATTTGCTTGTGAAATTGCCAATTGTGCAGTAGCTTGACCTCTTGCCAAGAAGCTTATTCTGGTGGTAGAACTGCCTGTATAGGCTTGTATGCAAATCCGATGCATGTAAACATTGAACTGTAGCACGGAAGGTAGTAGGACACCTTGCCAACCTGACCCCCTACCAGCACCAAATGTCATTGTTAGACCATGCAAAATGCTTCATGAACACGTAAgcatataattgtataagtgtACAATTtgtcaatatgtatttatatatacatatataatttataaaaacagtGGTTTCAACTTTAAATGTTCAGCACAGAAGAAGCTGGAATATTGGTAAAACCTATATTAAGAGCCACACCTTTTCCTGGCTCTAAAACTGAGTGAAAAGACTgaagataacatttttaaaaagcagacacAACATGCTGAGAGTATCTTGTCTGTATTCAGGCCCGTGCCTCCCCTCTTTAAACAAAACAGCGGTGGAAAAAGGTGGCTTTGATTTTGAAACGGACGGCCACAAAGGCAGCGTGGGAAGTAGACGTATCTGGTGCATAGATTTGTTCTCGATTCCCTTTGGTACAAAGCACAGCGTAACCTTTCCAAGGTCACCGGTGGGGCGTTAAGAAACGGAGGTGAATTCGGCAGGTTTACTCAGTGCCTTCGCTTTCATATGGACTGGTGTCATTACTGCAATGCAAATGATGCCTTCCTTACTTTCTCAAAGTGTCTAgatgtatagtgtgtgtatgtctccACACATTGTATATACtctcttttccattttcatttccccccccccccaaaccagactttcatatttatttttttagtatttgCACGTGATGCGGTTATGGATGCTGTGCGGTACTCAACTGTAGGGTGTAAAGGTTGTCGGAATACTTTCCAACTTTTtgaaattctttatttttcttaaatataaccACCTTTGAGCATTATGTAGCTATTAAGATAAACATCGACTATAACATTGAATATATTGCTGGTCAGTAATCTGCCTGTATTGGGATTGTAGTTTGGAAAAGGTGTATCCTTGTATGGAAATAATTAGTCAATGTGTGCCCTTGGTTTCAAGATAACTAGCACTTTAAATAACTGCAGCCATTGTCCCTTTTACCCCCAACCAGGagatataaaattataaaatgtaatattacagTTGAACTATTTTACCTGCCAAGAGCTTCATGGTGTTACAAAAATGAATACCAGAATAGTTACAAAAATGAGGGAAGCATTTCTTGGCTTGTTTTCCCATTAACAATACAGTTACAGTTTGTTCATGATCTTCAGCTTTTTATACAGATGAGGGGAGCCAACTGTATATATGCCAAATTTgtggatttgtttaattttgtgtagAAATTCTATATGTAGTGCCATTTGTGGCGTTAACTAACACTGTATCGGGTTACAAAGGGCTTACACTATGCACTTTcataactataaaataaatatgagtaATAC

Function

symbol description
smim14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SMIM14 (small integral membrane protein 14).

NR:

description
PREDICTED: uncharacterized protein LOC107700293 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017829 True 2489 mRNA 0.43 6 24705270 24715730
TU116638 False 2242 TUCP 0.42 6 24705379 24715621

Neighbor

gene id symbol gene type direction distance location
AMCG00017825 pds5a,LOC107757607 coding upstream 25136 24651100 ~ 24680134 (+)
AMCG00017823 rbm47,LOC107702361 coding upstream 128088 24567601 ~ 24577182 (+)
AMCG00017821 apbb2b,apbb2 coding upstream 273739 24403853 ~ 24431531 (+)
AMCG00017820 apbb2 coding upstream 313065 24386275 ~ 24392205 (+)
AMCG00017822 NA coding upstream 330693 24369729 ~ 24374577 (+)
AMCG00017831 rpl9,rl9,LOC107700291 coding downstream 10879 24726609 ~ 24730164 (+)
AMCG00017830 LOC107598304 coding downstream 25230 24740960 ~ 24758655 (+)
AMCG00017835 NA coding downstream 171533 24887263 ~ 24905777 (+)
AMCG00017841 NA coding downstream 257150 24972880 ~ 24973770 (+)
AMCG00017842 NA coding downstream 337464 25053194 ~ 25073949 (+)
G93454 NA non-coding upstream 76852 24626559 ~ 24628418 (+)
G93354 NA non-coding upstream 657502 24044178 ~ 24047768 (+)
G93241 NA non-coding upstream 884747 23818331 ~ 23820523 (+)
G93238 NA non-coding upstream 890849 23813846 ~ 23814421 (+)
G93237 NA non-coding upstream 892822 23810025 ~ 23812448 (+)
G93588 NA non-coding downstream 232261 24947991 ~ 24949268 (+)
G93651 NA non-coding downstream 593972 25309702 ~ 25312347 (+)
G93675 NA non-coding downstream 692787 25408517 ~ 25409609 (+)
G93688 NA non-coding downstream 801571 25517301 ~ 25517637 (+)
G93733 NA non-coding downstream 1234006 25949736 ~ 25950372 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 593160 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 1375701 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 3854653 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 3883222 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 4702141 19993085 ~ 20003129 (+)
AMCG00017843 NA other downstream 334579 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 2277161 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 2757151 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 3916162 28631892 ~ 28646750 (+)
G94275 NA other downstream 4717682 29433412 ~ 29450347 (+)

Expression


Co-expression Network