AMCG00017835


Basic Information

Item Value
gene id AMCG00017835
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24887263 ~ 24905777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017835
CAACGTCAACAGCCAGTCTCACGCCAACTCCTATGGCAGAGCAAAGGGAAATGGAGAAAAGGCTGTGAAGACGACAAGATCCACTGCTGTAGCCTTTGTTATCCATCTACGGAAGTGGAGAAACATGTTTCTGCACACCCGAGCATCAGAGAGTTAAAAACCAAGAGACAGGAAGAGGCAACCAGAGAGCAGGCATGACTGTGGTTCAGCACACGTGTGGTGACAATGGCTAAAGCTGCTTTAAGCAAACTGTTAATTCTCATACTGGTCATCTTAATACTATGCCTCCCAGAGTTCTTCAACACACGTGAGGGaataaagatatttttttcatgcataaAGATGTGTTTGTCCCCTGATGAGATGCAATTCTCAGCTTTCTTTAACATTCCTCGGCATGATCTGAAAGATGCTATTCTGGAAGTCTGCATGGGATATTTGAACAGCAGCTCAGAGGGACAGGCTCTTGAAATTGAGGGAGTCGGGACACAAGGTGACCCCCGATCAGCGTGGTTTGTGTGTGAGACCGAGACTGACCTGCAGTCCATCTATCAAAACATCTCATTCTCAGGGTCAAATGTCAATGCATCCTCAGCAGCATCAGAGCCCAGGTTTGCACCACAGAATATAAAACTCATGACTCATAAAGGGCAGTCGCACTTTACTCAACTGACACATATCAGTGCCCTGAAGACCTACTGCCTCTTACTgCAAGGCCAGAGGAGTCCCAAGCCTTTAAACCCAGTAATTCTCAAACTGTTCGGCGGGAAAGGCACCTCCCTTCAGTTCCTGAGCATGAGCAAGGAATGCAAAGGAGGTCCCTCCCTTCACTTCTCGAGCACGAGTCAGAACTTTATCAGAATGAGGAGGAAACCAATCCACCAGAGTATACAAATGacagacagcagcagtgAGTGACAGCGCCTGCATGTCTGTAGTGGAGTAAGGACTCGGCACAGACATTTCACCCCGCCGGCCGACTACTCCACTGCCCCCGTATGAACAATGTGTAGAGAACTGTGACTAATGCAGAGAACAGTTGACTGAAGTTGTACATTTGTGtgttaatacaacattttatacttatttatgaATGATTTATCTTGGTACTATACTGAAATGAATTCTTGtaatattacaaaaagaaagagtGACACCCATATCCAGaactattaaaaatactttatactTTCCATTCTAGCTTCATGTTTTTGTCAATAGTGCACTAAGCAACTTCACGGTGGCAAGTGAGGGGGTTAGTTTCTTGGGGGCATGGTTAACGTAAACCTGGCCAATCACACTGAACCGTAGTTGTATTGTAAGCAATGAGTAAATAATAGCAGCTGTACTCTAGTTGATGTACATGCTTTGGCATATCTGTCGATTGTCAAATTGAATACTGACCCTCAGGACTGGAGACCTGAGAATATATCTGTGTGCTCATCGCCTGCCTATATTGTATACTTTCATAGTATttcaatctaattaaaaaacaaaaaacacaactttttttgttgttgctactTTTATTTCTGGGATGCACAAGCATTTTGGGAATACTCcttattacaatatttgttatgttttgaggACCACATCTCTAACATAAGGGCACTTAAAAATGAACAACATGTCTGGTATGTCAACTCGAATTCTGaataataaaaacctaaaatCCCTTTTTTCTGTACTGCATACTATTATGAAAGTTTTAAGTTTTAGCTCCTTATTTCACTTAATTTATTAAGCAGTAAATGTGGAGCTGCATTGATTGATAACAAAAGCATGCTTTCCATATTTTAACAAACCCCAGACCTAAATGCCATTTTAATGAGAATgaaaattacattcatttaaagttCAAGGCAAATACAAGAGAATCCCTAAGTATTGGAGCCATTGTTAATCGTACTTAACACATTCATGTACGGAGGGAAGTTTatagaagtaaataaaatgcagcGCAAAGATCATCAACAGAATGTAAAACACAGAAGTTGAGTACAAGGATATTCAAGACCGCATAGGAGGCGCTTGCTCACATCATTGTTAGTtttctgattaaataaacagtttatgGGATTGCACCACATAATTCAAAAGTGTATTGATGGGAGTTACTTCTGTACCTATACATGAATCATGAACAACATAAGTATTTTAGCTTGTAATAGTATAATTCATCCTATACAATAGTGTTCTGATTTGCATATACTGTGATTAAGGACATCTCTGTGAATAgtgactgaaagaaaaaaatcatagtAGGCCTTCTGTGAATTTTCTATTTGAAAAGTGTATgaccaaagcacaacacaatgtTAATACTTTACAAGTTAATACTTGaccagtttttaaataattaaaaaagaattta

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017835 True 2377 mRNA 0.39 9 24887263 24905777

Neighbor

gene id symbol gene type direction distance location
AMCG00017830 LOC107598304 coding upstream 128608 24740960 ~ 24758655 (+)
AMCG00017831 rpl9,rl9,LOC107700291 coding upstream 157099 24726609 ~ 24730164 (+)
AMCG00017825 pds5a,LOC107757607 coding upstream 207129 24651100 ~ 24680134 (+)
AMCG00017823 rbm47,LOC107702361 coding upstream 310081 24567601 ~ 24577182 (+)
AMCG00017821 apbb2b,apbb2 coding upstream 455732 24403853 ~ 24431531 (+)
AMCG00017841 NA coding downstream 67103 24972880 ~ 24973770 (+)
AMCG00017842 NA coding downstream 147417 25053194 ~ 25073949 (+)
AMCG00017848 zbtb5,LOC101168920,LOC101469222,LOC102302739 coding downstream 177142 25082919 ~ 25093338 (+)
AMCG00017847 NA coding downstream 203114 25108891 ~ 25112677 (+)
AMCG00017849 pax5 coding downstream 344417 25250194 ~ 25262749 (+)
G93454 NA non-coding upstream 258845 24626559 ~ 24628418 (+)
G93354 NA non-coding upstream 839495 24044178 ~ 24047768 (+)
G93241 NA non-coding upstream 1066740 23818331 ~ 23820523 (+)
G93238 NA non-coding upstream 1072842 23813846 ~ 23814421 (+)
G93237 NA non-coding upstream 1074815 23810025 ~ 23812448 (+)
G93588 NA non-coding downstream 42214 24947991 ~ 24949268 (+)
G93651 NA non-coding downstream 403925 25309702 ~ 25312347 (+)
G93675 NA non-coding downstream 502740 25408517 ~ 25409609 (+)
G93688 NA non-coding downstream 611524 25517301 ~ 25517637 (+)
G93733 NA non-coding downstream 1043959 25949736 ~ 25950372 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 171533 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 775153 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 1557694 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 4036646 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 4065215 20799595 ~ 20822048 (+)
AMCG00017843 NA other downstream 144532 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 2087114 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 2567104 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 3726115 28631892 ~ 28646750 (+)
G94275 NA other downstream 4527635 29433412 ~ 29450347 (+)

Expression


Co-expression Network