AMCG00017836


Basic Information

Item Value
gene id AMCG00017836
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24903782 ~ 24918826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017836
TCAGGAGTGCACTGACGTCACCCACAATAACAGCAGGGCTGCCTGCCGACGTGgcggaggagagggaggagagcgGAGCGGCCGGGTGCGACAGGACTGCTGCAAAGAAAAATGTCGCAGCACGATGGGAGCGATGGCGGTCTTCCGGACCTCAGCGGGCCTGTCTTGGAGCCGCACGGAGACGACGAGCCCTGTCTGACGGACACAGAACCGAAAGACAAACCATCAGAGCCCGTGACGGATACTCTGCCGAAGGATGAGAAGGATCAGCTGCCCGGCGGGATCAATGAGCCCCAGACAGAGGAAGCTCCCAGGTCCCCAGAGGATGTGGCAGTGCCGGGGGCTGAGAGCACAGTGCCCATGGAGACAGGAGGGGCAGGCTGCCAGCTCAGTCACGAGTGCCACGAGTGCCACGAGTCAGTGAGTCTGGAGCCGGACGCTACAGGAGACCGGACTGGGCCAGAAGGAGAGAGTGAGCAGGAATCCAAAGACAAGAGCTGGGGAGGCTGGGGCTCCTGGGGTAAATCGCTTTTGACCAGTGCGACCTCCACTGTGGGGCAAGGGATCAACGCCGTAAAGGAAAAGGCCGGAGTGACTTTAAGAAGGCCGAGGACGACCTCCGCATCTGAGGAGGCCAAGGAGGCAGAGGCCAGTAAAGAGGGAGTGACAGAAGCAGAGGATCTCCAAGACCAGCTGGaatgcccccccacctccccgtCCTCTGGGTCCCGAGGAGTGCTGTCCACCATTACCAGCGCTGTCCACAACACAGGAAAGTCTGTGATAACAGGCGGGCTGGATGCGCTGGAGTTTATTGGGAAGAAAACAATGACTGTCCTTGCAGAAAGTGACCCTGGCTTTAAGAAGACCAAAATCCTCATGCAGAGGACCGTGTCACTATCGCAGATGTTAAAGGAAGccaaagagaaggagagggagaggatgagCAGTCAGCTGGTGAGCGAGCCCACGGTCCACTACGGGATTCTGTTTGATGACTTCCAGGGACTGTCCCATTTGGAAGCTCTGGAAATCCTGTCTAATGAGAGCGAAGCAAAGGTTCAAGCTGTCTTAATGTCACTAGAGGAAgagcagctagagtccctgaaGAAGGAGCTGATTGCCATTAAAGACATCTTCACAGAGAAGGACTTTGAAGAAGaagtggagggagaggagaaagTGCTGGTCGAGCCGTGTGCTGTGTCTCCAGCTGATGACGGAGAGGAGTTCGTCAACGTTGTCACGGAGCTGCTCTTTGAGTTGCACATCGCTGCCACGCCAGACAAACTGAACAAGGCCAGAAAAAGAGCGCATGACTGGGTAAAAGAAGTGAAATCTTACACAGAAACATCTGCCGATGAAGTGGcaacaaaagaaagcaaagatCTTGGTGCTGAAGAAGATAAAGAAGAGAGCAACACAGAAGAGAGCAGTCTGAAATCGGTAGAGGGTATCTACGAGTCCGCGGTGGGCAGCCTGGCAGAGGTCACGGCGCGGGGCATTGAGCAGCTGCACAAGGTGGCAGAGCTGATCCTGCACGGGCAAGACGTGGAGCGTCCCGCGGCACAGCAGGCGCACATCCTGGCCAAGCTGACCAGTGCTATGTGCTCAGAGGTGTGTTCCCTGTCTAAGGAGTTTACTGACACGCTGGTGGCTGCAGGGagCAAGCAGAAAGCTGAAGAGTTGAACCCCCTGGTAAACAGCATTATACTGGAGGGATCAAACAGCACCACCTACATTCAGAATGCATTCCAGCTGCTTCTCCCAGTGTTGCAGATCTCCCACATCCAACTGACCACAAGCAAAATGGACAGTGAGCTCTAGCCTTGTAGAATCTACAGAATCTTGCTTTAATTCATGGGAATTCcaccacagaaaaataatatttagaatAGAATCTGCACTATTGAGAGTGAATATAATTAtctagtctgtgtgtgtgttaaagagATATACAAGATAAATTATTAAACTTCCTGAAGTGCTTTAAAGTTTACTAATAAGTGTCAGTGGGACACTTTGATGCCTTATTAGTGGGGCTGTTGATgttccttttctctctttacAGTGAGACAGTTAAAGACACAACAGAACTACTGTTGGCAGGTAGATAATTATTTATGACAAAAATGTTAggcattaattattaattgttgcTAATCAATCTGTGAGTTTCCACCGGGGTTCTGCAGATGAGAGACCATGTAGCTTCACAAATCCATCACGGAATGCAAAACAGTGAAACCTAATCTGTGTGGTTGGAAATGAAGCTTATTgattaagaaaaggaaataaagtaGCAGGGCAACCGTTAAACATGCCAATCACTTGCATTTCAACACAAGTTTCTTTCCTCTTGTTCGCCCCACTGCAACTTTTGCATGAATTCCTTAAATCTCTCCCTTTGCGGTTTAGACGAGGAGGTCTGCATTTCAAATCAGGAAATTATTTCTATATCCACTTAAAAATAGGAGGATAAAAAGACCAAGCGAAAATGATTTGGAAAAGGTTCATAAAGGGAAATGAAGAAATGGCTTTACTATGCTCACCCTTTAGGGGCTGCCATTCAGTCTGGACGCAGGTGCTGAGAATCCCAGTCCTGCTCCGACAGCACCATTACTCTCAAGCCCCTCCAGTTCAGTCCCTACACTCCGGTTTTGTCACTTTAGTGCTGCTATATATAATAGTCCTGCTTATGCCACTAGCCTAACCATTTTACATGTAGTATATTCACAAATTATACTGTATAGTGGTCTGTCCAACATGGATGCTCCTGTTCAATTCAGGACATCAGGATTAAACTTCTAATATGTCTGATGCTtgtttgcaatatttaaatacaagcGAAGGCActatttaaagcttttaaatgtttaaattgaagTGCTGCTGTGGTTAagtagtattttgtatttttccatggTTATACAAATTTAATGTTGAATTTTGACACAGAATATGAAACTGAGAGGGTTTATTTTATCAGTGTGGTTCAGTGCAATTGCAGGACCACAGCCCCTGTGCTCCTGCTTGTTTTCTGTGCGTGTTCAGTCCGATTGTAACcaattatttgttaattgttataattatcattattaaattcttttttaattatttaaaaactggtCAAGTATTAACTTGTAAAGTATTAacattgtgttgtgctttggtcATACACTTTTCAAATAGAAAATTCACAGAAGGCCTactatgatttttttctttcagtcacTATTCACAGAGATGTCCTTAATCACAGTATATGCAAATCAGAACACTATTGTATAGGATGAATTATACTATTACAAGCTAAAATACTTATGTTGTTCATGATTCATGTATAGGTACAGAAGTAACTCCCATCAATACACTTTTGAATTATGTGGTGCAATCCcataaactgtttatttaatcagaaaACTAACAATGATGTGAGCAAGCGCCTCCTATGCGGTCTTGAATATCCTTGTACTCAACTTCTGTGTTTTACATTCTGTTGATGATCTTTGCgctgcattttatttacttctatAAACTTCCCTCCGTACATGAATGTGTTAAGTACGATTAACAATGGCTCCAATACTTAGGGATTCTCTTGTATTTGCCTTGaactttaaatgaatgtaattttcATTCTCATTAAAATGGCATTTAGGTCTGGGGTTTGTTAAAATATGGAAAGCATGCTTTTGTTATCAATCAATGCAGCTCCACATTTACTGCTTAATAAATTAAGTGAAATAAGGAGCTAAAACTTAAAACTTTCATAATAGTATGCAGTACAGAAAAAAGGGattttaggtttttattattCAGAATTCGAGTTGACATACCAGACATGTTGTTCATTTTTAAGTGCCCTTATGTTAGAGATGTGGTcctcaaaacataacaaatattgtaataagGAGTATTCCCAAAATGCTTGTGCATCCCAGAAATAAAagtagcaacaacaaaaaaagttgtgttttttgttttttaattagattgaaATACTATGAAAGTATACAATATAGGCAGGCGATGAGCACACAGATATATTCTCAGGTCTCCAGTCCTGAGGGTCAGTATTCAATTTGACAATCGACAGATATGCCAAAGCATGTACATCAACTAGAGTACAGCTGCTATTATTTACTCATTGCTTACAATACAACTACGGTTCAGTGTGATTGGCCAGGTTTACGTTAACCATGCCCCCAAGAAACTAACCCCCTCACTTGCCACCGTGAAGTTGCTTAGTGCACTATTGACAAAAACATGAAGCTAGAATGGAAagtataaagtatttttaatagttCTGGATATGGGTGTCactctttctttttgtaatattaCAAGAATTCATTTCAGTATAGTACCAAGATAAATCATtcataaataagtataaaatgttgtattaacaCACAAATGTACAACTTCAGTCAACTGTTCTCTGCATTAGTCACAGTTCTCTACACATTGTTCATACGGGGGCAGTGGAGTAGTCGGCCGGCGGGGTGAAATGTCTGTGCCGAGTCCTTACTCCACTACAGACATGCAGGCGCTGTCACTcactgctgctgtctgtctgcaggACCCAACGAGAAAAGAAAGCaccacattcaaaataaatacatttgagtaTAGCATCAAAATGGTTAATACATGGTTCTTGTGAATATTAAGTTTGTGTGCAATAATAAAACTTCCCTGCTGTCACAAAGTACAGACACCCAACATTATTTCACTTAATTCTGCGGTTCAGCAAAGTCATGTCTAGCAGTTAGCATATGTTTTTGACAACTTCAGAATGTGTTTAAATTCTCTTCACAGTGGGGGGTCTATGCATCAAACTGTCATTTTTAGGCCTTTTGTACCTTCAGCTTGCAATTGCAGTTTTTTAATGTCAAACCGagtatgttgaaaaaaaaaacattaaattatgcTGAAGAAAACACCTAAATGTAGCTAAATGTGTTTGATTCGTTTTATGGTTGTAGTGTTTTTCCTCAATTACTGCTTACCATTTATGTtctatacatttgcataatctgCATTACTTCTGtctgtaataaaataaccaaaaaataaaacctttaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017836 True 5095 mRNA 0.43 14 24903782 24918826

Neighbor

gene id symbol gene type direction distance location
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding downstream 64635 24799083 ~ 24839147 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding downstream 115441 24759381 ~ 24788341 (-)
AMCG00017832 NA coding downstream 164281 24732695 ~ 24739501 (-)
AMCG00017833 lias,LOC102787141 coding downstream 178090 24716450 ~ 24725692 (-)
AMCG00017834 ube2kb,ube2k,LOC107088242,LOC108261162,LOC100708886,LOC105026169,LOC102229303 coding downstream 202733 24685303 ~ 24701049 (-)
AMCG00017837 ints10 coding upstream 9345 24928171 ~ 24942633 (-)
AMCG00017845 NA coding upstream 46648 24965474 ~ 24986772 (-)
AMCG00017846 NA coding upstream 156779 25075605 ~ 25080431 (-)
AMCG00017851 NA coding upstream 176372 25095198 ~ 25100631 (-)
AMCG00017850 NA coding upstream 182007 25100833 ~ 25105142 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding downstream 173560 24725938 ~ 24730222 (-)
G93500 NA non-coding downstream 223882 24677165 ~ 24679900 (-)
G93434 NA non-coding downstream 398172 24505382 ~ 24505610 (-)
G93399 NA non-coding downstream 601802 24301420 ~ 24301980 (-)
G93355 NA non-coding downstream 857413 24044194 ~ 24046369 (-)
G93576 NA non-coding upstream 3641 24922467 ~ 24927188 (-)
G93591 NA non-coding upstream 31142 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 187976 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 192064 25110890 ~ 25111090 (-)
G93660 NA non-coding upstream 454107 25372933 ~ 25381038 (-)
AMCG00017819 NA other downstream 633187 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1581828 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4545157 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5484426 19412987 ~ 19419356 (-)
G92436 NA other downstream 6440606 18462784 ~ 18463176 (-)
AMCG00017839 NA other upstream 27269 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 78718 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1026315 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1093662 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1185200 26104026 ~ 26107805 (-)

Expression


Co-expression Network