AMCG00017838 (wdr19,LOC107591558,LOC107750430)


Basic Information

Item Value
gene id AMCG00017838
gene name wdr19,LOC107591558,LOC107750430
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24759381 ~ 24788341 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017838
ATGACTCACATCTTTATTAAGCGTGTTTTCACACTCTCGGAGAAGGCGTGGCAGGGGCTGGGCTTGCACTACAAGTGGCAGAAAACTTTGGGGAATTACCTCGCTGTTGCTGGCATTGACCAAACAGTAAAAATATTTGATCGCCATGGCCAAAAGAAGAATGAAATCAACCTGCCAGGCAAGTGTGTGGCAATGGACTGGGATAAAGATGGAGACATCTTGGCAGTGCTTGCAGACAAATCCAGCTCTATTTACTTGTGGGACGCCAACACGAACAAGACCAGCCAGCTGGACAGTGGCATGAGGGACCAGATGTCCTTCATTCTCTGGTCCAAAGTGGGGAGTTTACTGGCTGTGGGGACAGGGAAGGGGAACCTGCTCATCTATAACCAACAAACCTCACGCAAGATTCCAGTTCTCGggAAGCACACAAAGAGGATTACCTGTGGCTGCTGGAGCTCCCAAAACCTGCTGGCTCTGGGCAGCGAAGATAAGACTGTGACTGTCAGCAACCACGAAGGAGACACCATCAGACAGACCACAGTCCGCGCGGAGCCCGGCGACATCCAATTCTCTGTGATGAAGACGGATGAGCGTGCCACCGTGGGTGAGAGCACGGCCAGCGTGGTGGTTGGGAAGAAGACCTTGTTTCTCTTCAACCTCAACGATCCTGATAACCCTATTGAACTGGCCTTCCAGCAGCGCTACGGCACCATAATTGCTTATCGATGGTATGGGGACGGGTACATTATGATTGGCTTTTCCCAGGGCTACTTTGTGGTGATTTCCACACACATCCGTGAGATTGGTCAAGAGCTCTTCCAGGCGCACAATCACAACGACAGTCTGACCAGCATCGCCATCTCCCAGTCACTCAACAAGGCCGCCTCCTGTGGAGACAGCTGCATCAAAATCCACGATCTATCAGAGCTTAAGGAAATGTACGCTATCATTAACCTGGATGATGAAACCAAAGGTTTGGATTACCTGTCCTGGACGGACGATGGTCAGCTGCTTGCTGTTTCCACCCAGCGGGGGACGCTCCATGTTTTTCTGACCAAGCTGCCCATCTTGGGAGACACCTGTGGGACAAGGTTGGCCTATCTCACCTCCTTACTGGAGGTCACTGTGGCCAATCACGTGGAAGGGGAGCCGGCCATCGCTGTATCAGTGGAGGTGGAGCCTAACTTTATTGCTGTGGGCCCTTATCACATCGCTGTGGGAATGAACAACCGTGCCTGGTTTTATATTCTTGGAGAAAAAGGGGTAGAAAAACGTAAAGATACGGAGTATCTCGGGACAGTAGTCAGCATGTATCTCAACTCTGATTACGCTGCAGCGCTTTTTGAGGGGAAGGTACAACTGCATATGATAGAGAGCGAGGACCAGGAGACGCAGGAGGACAGACAGACGCGCCTCTTCCCAGGACGAGATGACAAGTGCCGCATCCTGTCTCACGCCCTGACAGCAGACTTCCTCTTTTACGGAACAGATACTGGTGCCATTAACTGTTTTTACATAGAAGACTGGCAGTATGTCAACGAGTATCGGCACACAGTGGGAGTTAGGAAGATTTTCCCAGACCCCAATGGAACCAGGCTGGTTTTCATCGATGACAAGAGTGATGGCTTTGTCTTCTGCGCAGTGAATGATACCGTGTTTGAAATCCCCAATTTCTCACCCACCATCAAAGGAGTTCTGTGGGAAAACTGGCCCATGGACAAAGGTGTATTTATTGCCTATGATGATGATAAGGTGTACACATATGTCTTCCACAAGGACACAATCCAAGGTTCTAAAGTGATCCTCGCTGGAGGCACCAAGCTGCCATATTCCCACAAGCCCCTGCTGCTGTACAATGGAGAGCTTACCTGCCAAACACAGAGTGGCAAAACCAACAGCATCACCCTGAGCACGCATATGTTCCTGGAGAGTCCCCAGGGTGGCACTACCAGTGACCTTGGCCGCTCCCTCACACAGGCCCTCATGCTCAAGAGGTTCACGGAGGCCTGGGAGCTGTGTAGAGTCCTGCAGGAGCCCTCAGCCTGGACGGAGCTGGGCAGAGCCTGTCTGCACCACATGGAGGTGGAGCTGGCCATCCGAGTGTACCGCATGACCAAGAACGTGGGCATGGTCATGTCTCTGGAGGAGGTGAAGGGGATTGAAGATCAGAACCTCCTTGCAGGACATCTCGCCATGTTCACCAGTGACTTCAATCAGGCCCAGGATCTGTACCTGTCTTCTTCTTGCCCAATAGCCGCACTGGAGATGAGGAGAGATCTGCAGCACTGGGACAGTGCTCTCCAGCTGGCAAAACGCCTGGCTCCTTCCCAGATCCCGTTCATATCCAAGGAGTACGCCGTCCATCTCGAGTTTGTtggTGACTATGTGAACGCGCTGGCTCATTATGAAAAGGGAATAACCGGTGATAATAAGCACCAGGACCATGATGAAGCCTGCCTGGCTGGGGTGGCCCGCATGTCTATCAGAATGGGGGATATCCGCCGAGGGGCCAACCAGGCCATCAAGCACCCCAACAGACAGCTAAAGAAAGACTGCGGGGCCATTCTGGAGAGCATGAAGGGGCAGTACTACGACAAAGCCGCATCCGTTTACATCCGCTGTAAGAACTGGGCAAAAGTGGGGGAACTCCTGCCTCACGTGACCTCCCCCAAGATCCACCTACAGTACGCAAAGGCTAAGGAGGCTGATGGCAGATACAAGGAGGCTGCCATGGCTTACGAGAACGCAAAGGACTGGGACAATGTCATCCGCATTCAGCTGGACAACCTCAACAACCCAGAAGAAGCTGTGCGTGTTGTCAGGGAGACACAGTCCATCGACGGGGCCAAGATGGTGGCCAGATTTTTCCTGCGGTTGAATGACTACGGTTCGGCGATCCAGTTTCTGGTCATGTCCAAGTGCAATGACGAGGCTTTCCAGCTGGCCCAGCAGCACAGTCAGATGGAGGTGTATGCGGATATCATTGGGTCGGATGCCACCATGGAAGACTATCAGAGCATTGCCTTATActttgaaggggaaaaaaagcaccTGCAAGCTGGGAAATTTTTCCAGTTGTGTGGGCAGCATTCCAGAGCCCTGAAACACTTCCTGAGATGTCCCAATACAGACGACAACCTGGCGATCGAAATGGCCATAGAAACTGTTGGACAAGCCAAGGATGAAGCTCTCACCAATCAGCTGATTGATTACCTGATGGGGGAGAGTGACGGGATGCCCAAGGATGCCAAGTATCTATTCCGCTTGTACATGGCGCTGAAGCAGTACAGGGAAGCTGCCCGGACTGCGATCATAATCGCCAGAGAGGAGCAGTCTGCAGGGAACTACAGAAACGCCCACGACGTTCTCTTCAGCATGTACACCGAACTGCAGACACAGAAGATCAAAATCCCCTCTGAGATGGCCACCAACCTCATGATCCTGCACAGCTATATACTGGTCAAGATACACGTCAAGAGGGGGGACCACCTGAAGGGGGCGCGAATGCTCATCCGAGTCTCAAACAACATCAGCAAGTTCCCCTCTCACATCGTGCCCATCCTGACCTCCGCCGTGATCGAGTGCCACCGAGCCGGGCTGAAGAACTCTTCCTTCAGCTTCGCGGCTCTGCTCATGAGGCCAGAGTACAGAAACAAGATTGACGGGAAGTACAAGAAGAAGATCGAAGCCATGGTTCGGCGCCCCGACACCtcggagctggaggaggagacgtCACCCTGCCCGTACTGCGGCTTTCAGCTCCCCGAGTGTGAGCTGCTGTGCCCCGGCTGCAAGAACAACATGCCTTACTGCATCGCCACAGGCCGCCACATGGTGAAGGAGGACTGGACCGTGTGCCCCCACTGTGACTTTCCTGCGCTGCACTCGGAGTTTCTGGTTTTACTGGAGACAGAGTCCGCATGCCCCATGTGCTCGGAGAGCCTCAACGCCAGTCACCTTAAGAAGATCACAGACTGTGCCAACTACCTGCAACCCGACCAAGTGGAGCAGTGACCTGCATTTGCTTGAACAGGCAGTCAGGAGATCCAGGTTTCAACAACGAAAACCTTGTTCCACAATTCAGACTTTAATACGGATGGTTCAAATCTTTTGAGTCTGAAGAGGTCCTTCTGTTCAAGATGTCTTTAGAGTTGACCATACAAGTAGACCCACCTTGACAAGAGTCAATTTCAATTCTATTCAACTTTCATCCAGATaagtatatttatgtaaatagaCATAGATCATGaactgattttgtatttaatattgtaatttctCGTCTTATATATGTAAGACATGTATGTGT

Function

symbol description
wdr19 Acts upstream of or within cilium assembly. Predicted to be part of intraciliary transport particle A. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in several diseases, including Caroli disease; Senior-Loken syndrome; asphyxiating thoracic dystrophy 5; cranioectodermal dysplasia 4; and nephronophthisis 13. Orthologous to human WDR19 (WD repeat domain 19).

NR:

description
PREDICTED: WD repeat-containing protein 19 isoform X2

GO: NA

KEGG:

id description
K19671 WDR19, IFT144; WD repeat-containing protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017838 True 4312 mRNA 0.52 37 24759381 24788341

Neighbor

gene id symbol gene type direction distance location
AMCG00017832 NA coding downstream 19880 24732695 ~ 24739501 (-)
AMCG00017833 lias,LOC102787141 coding downstream 33689 24716450 ~ 24725692 (-)
AMCG00017834 ube2kb,ube2k,LOC107088242,LOC108261162,LOC100708886,LOC105026169,LOC102229303 coding downstream 58332 24685303 ~ 24701049 (-)
AMCG00017826 NA coding downstream 109383 24628371 ~ 24649998 (-)
AMCG00017828 rhoh coding downstream 147374 24611429 ~ 24612007 (-)
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding upstream 10742 24799083 ~ 24839147 (-)
AMCG00017836 NA coding upstream 115441 24903782 ~ 24918826 (-)
AMCG00017837 ints10 coding upstream 139830 24928171 ~ 24942633 (-)
AMCG00017845 NA coding upstream 177133 24965474 ~ 24986772 (-)
AMCG00017846 NA coding upstream 287264 25075605 ~ 25080431 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding downstream 29159 24725938 ~ 24730222 (-)
G93500 NA non-coding downstream 79481 24677165 ~ 24679900 (-)
G93434 NA non-coding downstream 253771 24505382 ~ 24505610 (-)
G93399 NA non-coding downstream 457401 24301420 ~ 24301980 (-)
G93355 NA non-coding downstream 713012 24044194 ~ 24046369 (-)
G93576 NA non-coding upstream 134126 24922467 ~ 24927188 (-)
G93591 NA non-coding upstream 161627 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 318461 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 322549 25110890 ~ 25111090 (-)
G93660 NA non-coding upstream 584592 25372933 ~ 25381038 (-)
AMCG00017819 NA other downstream 488786 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1437427 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4400756 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5340025 19412987 ~ 19419356 (-)
G92436 NA other downstream 6296205 18462784 ~ 18463176 (-)
AMCG00017839 NA other upstream 157754 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 209203 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1156800 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1224147 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1315685 26104026 ~ 26107805 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_07947621_07971434 WDR19 coding CI01000300 null 7947461 ~ 7971434 (-)