AMCG00017839


Basic Information

Item Value
gene id AMCG00017839
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24946095 ~ 24949136 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017839
CAAAAAGCGTGTCTTTGTTACAGAATGTGATTCTTTGTTAGCTGCatcatgctgtttttgttttaatctatatttaaagCTAAATGCATGTGGCAGGATGGTGCATGGTCAATGCGGTCTTGCAATCGAGCCACTCTATCCTTGTTGCTGCTTGGGGCTGAACAATTCCAGCAGggtttttattgcactttatatttttcatgtttattctgTAGACGACCTTGAGGTGTAGGGGGTTTAAAGCATCCAATGGAAATATTCAAACAGCTTCATTGACCAGAAATGGCAGACAAACCAGACCTGAAGGAGATCTCCGGCTTTGATAAGACCAAGCTGAAGAAGACGGAGACCAATGAGAAGAACACGCTTCCCACAAAAGAGAGCTTTCTCTCCCGCACACGTGTGTTTTGCTGCAGTGCTGTAAGCCGAGCCAGGAGGAGGCAGACGGTGTTAAACCTGACCTCTGGGGTGACGGACATAAGGCACTCCCATCCCTCCTTCGTCCCCTGCCCCCAGCAGACAGCAGAGTGTGCGAGGGAGCAGTAA
>TU116791
GCTGGGAGACGAAGGCGGAACCCTATTGTTCCGAGACTGCGACTCTCTTCACTTGGTGACTGCACCGCTGTCAACTTCATTGACCAGAAATGGCAGACAAACCAGACCTGAAGGAGATCTCCGGCTTTGATAAGACCAAGCTGAAGAAGACGGAGACCAATGAGAAGAACACGCTTCCCACAAAAGAGACAATAGCACAGGAGAAACAGACCGAAAACTCCTAAGCAGCGGCGGTACCGGAGCGCAGCATCCTCTCCTTTGTTCCAGGAGCGCCCGCCTGCAGAACGGGCAAGAGAGGCAACACACTGGGGGACATGGTCAGCCGACGAGAGGACTGGACGGGATGTGGTCTGCGGGGCAAATGTCTTGGCACGGATAACGCCACCAATttgtacaaatgtttaaatcgATTTAATAAACGTAATGattagaaatgcattatttttcgACTCTAATTTGAACTTGGAACCCTTAAAGCGGCACGGGGAATCGATGGTTGATTTGCAAGGGCTGCCTGATGGGtgtgtaccaaaaaaaaaaaaaagggatgcAATATCTACAGGCGTCTTGGATTAAGGTTAATTGGCCGTTTTTAAAGATCTAATCCGCCACAAAGCCTCACTAGTTGGTAGTGTGCTTGTGAATTTGCTGCAATAAGCAGGTTTTCATCTCCAGTTAAACCCACATTAGTCAATTAAGACTTGACTGTAC

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017839 False 546 mRNA 0.47 3 24946095 24949042
TU116791 True 711 lncRNA 0.47 3 24947658 24949136

Neighbor

gene id symbol gene type direction distance location
AMCG00017837 ints10 coding downstream 3462 24928171 ~ 24942633 (-)
AMCG00017836 NA coding downstream 27269 24903782 ~ 24918826 (-)
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding downstream 106948 24799083 ~ 24839147 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding downstream 157754 24759381 ~ 24788341 (-)
AMCG00017832 NA coding downstream 206594 24732695 ~ 24739501 (-)
AMCG00017845 NA coding upstream 16338 24965474 ~ 24986772 (-)
AMCG00017846 NA coding upstream 126469 25075605 ~ 25080431 (-)
AMCG00017851 NA coding upstream 146062 25095198 ~ 25100631 (-)
AMCG00017850 NA coding upstream 151697 25100833 ~ 25105142 (-)
AMCG00017852 NA coding upstream 166802 25115938 ~ 25224281 (-)
G93576 NA non-coding downstream 18907 24922467 ~ 24927188 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding downstream 215873 24725938 ~ 24730222 (-)
G93500 NA non-coding downstream 266195 24677165 ~ 24679900 (-)
G93434 NA non-coding downstream 440485 24505382 ~ 24505610 (-)
G93399 NA non-coding downstream 644115 24301420 ~ 24301980 (-)
G93591 NA non-coding upstream 832 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 157666 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 161754 25110890 ~ 25111090 (-)
G93660 NA non-coding upstream 423797 25372933 ~ 25381038 (-)
G93689 NA non-coding upstream 568150 25517286 ~ 25517600 (-)
AMCG00017819 NA other downstream 675500 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1624141 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4587470 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5526739 19412987 ~ 19419356 (-)
G92436 NA other downstream 6482919 18462784 ~ 18463176 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 48408 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 996005 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1063352 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1154890 26104026 ~ 26107805 (-)
G93796 NA other upstream 1159924 26109060 ~ 26110074 (-)

Expression


Co-expression Network