AMCG00017844 (frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878)


Basic Information

Item Value
gene id AMCG00017844
gene name frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24997544 ~ 25018212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017844
ATGGAAGAACAAGAGACTAATACGTCCCCGTCTCGCAAATCCAGTCGAGTTGAGCAGGTGGTGGGACGATGGCTCAGACGCTCCAGAGACACTGGCAGCAGGGAGAGGACGTCCGGAGATGGCTCATCCAGCGCCAAAGGCAACAGTCGGCAGAATTTCCCCTTGAGAATTACGGTCGAGATCCACAGGGACCTGCTACTGGACCAGATGGGTTTTGAGATTTCTGCACACCCTCCCTTCATAGTAAAGGATGTGTCTCCAGGAAGTCCAGCGGAGGGGAGGTTAGCTCCTGGGGACCAGATCCTGAAGCTCAACAATGTTCTTGTTGACGACCTGACTGGCCAGCAGGCGGCTGATATCATCAGGGAATCAAAACACTCTGTGACGGTCACTGTTCTCAGACATACCACAGGGCCAAAGTCCTCCTTTATCACAGCAGAGAAGCGTGCTCGGCTGAAGACCAACCCAGTGAAGGTGCGCTTTGCAGAGGAGGTGTTGGTCAACGGTCACACTCAGgGTAACTCGCTGCTCTTCCTTCCCAATGTCCTCAAGGTGTATCTGGAAAATGGCCAGACGAAAGCGTTCAAGTTTGAGGAGAAAACCACCGTAAAgGACATTATTCTGACCCTGAAGGAGAAGCTGTCGATCCGCTGCATTGAGCACTTTGCTCTGGTGCTGGAAGAACAGTACAACATTGCCCGGATCTACCTTCTGCATGCTGAGGAATACATTGAACAAGTGGTACAGAAGAAGGAGGCGCATAACTACAGGTGCCTCTTCAGAGTGTGTTTTGTCCCCAGAGACCCCCTGGAACTCCTACAGGAAGACCCAGTGGCCTTTGAGTATCTCTACTTACAGagctgcagtgaCGTGTTGCAGGAGCGATTCGCCGTGGAGATGAAGAAGGAGTGGGGCATTGAAAACTTCATCTCTCCCACTCTGCTGCGTAACATGAGAGACAAAGACCTGAAGAAAGCCATCAGTTACCACATGAAGAAGACCCAGGCTTTACTTGAGCCAAGGCAAAAGCAGCTCATCTCAGCAGCTCAGGCAAGGctgaattatttgaaaatactgGGAGAGCTAAAATCATATGGAGGAAAGGCCTTTAGCGCTACTATAATGCTTCAGGACAGAGAGTCTGTGGTCACGCTGCTTGTTGGGGCCAAGTATGGGGTCAGCCAGATCATCAACCACAAGCTGAACATCATGACCACCCTGACCGAATTCCTGAGCATCAGCCGCGTGGAGCTGATGCCAGAGTCAGAGAAGGTCAGCATGGTGAAGATCTACCTGCAGGACATCAAGCCAATTACATTGCTGATGGAGTCTCATGCTGCTAAAGACATGGCCTGCCTCATCGCTGGATACTACAGGCTGTTTGTGGACTCAGGTGTATCTGTGTTCTCCTGGACAGGAAACACCAAAACACATCGTATCTCAGCTGAGGAAGGTTACGTTTCGAGGGGCTGCAGTGACTCAGAGGAATCCTCTGAAATAGACTCCGCTCAGGACGTGATGGCCGAGCTGCACTTCCCGAAAGACAACCCTGGGGCAGAGATAGCGGGGGCAGGGCAGGAAGCTGAAGAGCTGAAGGAAGAAGGAGAGCTGGAGGCCCAGGGGGCGGAGGGAGAGCAGGGCCTGGAGGAGAACGAAGAGAACAGTCTTTCGGAGGCCTCTGACTCCTGCCGCACCGAGAGCAGGGAGGATTCCAGGTTCAACACCAGCTACTCCAGTGATTCCATGGATGCGCTGGAGGAGGACGATCTGATGGCTTGTTCATCCAGCCGGACATTGCTCCTGGAGGTCCATCACCCCTACCTGCTGGACTTGCCCGAGCAACCTGCAAGGGAAGACCGCAGCGGCACCATGGAGAACGACCCTTTTCTTTGCTTCTCCCAGCTTTCCCATATGGCCGACTCCCTTGTGGACCCAGACCTGGTGCCCAGCCCGTCAGGAGGCAGTGAACTGAACGACACGGTCTTTGACTGTGTGTTCACCTTTGAGGAGGACGCCAGACCGTACTATAACCTCTGCGCTAATCTCACTCCCGACAGTGCCCACGAGAGAAGCCTGCCTGGTGCCCCTCACCCGTCACCCGAGGATGAATCTCTGGAGCTTCTGGAGCCGCCTCCTATTCTCCAGCCCCCCCCCGGGTTCGGAGACAGCAGCTCTGATGATGAATTCTTCGATGCCCCTGAAAGACTCACTCCTACCAACGCCTTATCCCCAGatGATGCTGCTGAGGGAACCTGTTTGGAACGTACCTTGAGCCTGAGTGATATTGGAATCAGTGTCCCCGAGCGGGAGCAGGAACAAGAGGCTATGCCGTTTGTCAGGAAGTCCCGAAAGCGGCGCTCCTTCGTGGAAACTGACTACACATCCCAAGTGTCCTTTCCTGTTCCGCAAGATGATGAGGAGCCATGCTGCTTCGAGAAGGATCCTTTATCCTCTCACCGACACCGTTCCCCGACCACCTTCTCCCTGCGCAGCACTGAAGGTGAGCCTGCAATGCTGGAGACCAAGCCGATTGTCTGCCGCCAACCCCAGCCAGCCTCGCAGAGCAAGAAGTTGTCCTCGAACCTAATGGAGATGGAGCCGGACACGATGGAGACCAAATCCGTGTCCGAATCCCTGAGTGTGGTGTCTCCCATCATGGCCATCCACTGCAGGAGAGACTCAGAGGGCAAGGTGAGCTGCAGGGCAGAGGACACAAGCTGCAACCTGGTGGCTGAGGAAAATCCTTTCATCCACCACATGTTCTTAAGCCAGGCCAGTGAAGAGGCCAAACCTTCTAATGTTACCTCTCAGGAAGAGAAGATCTTTGGAGGGGGCCAGCGAATGGAGGATGTAGAGGAAGATGACAGCATCATAGAAGCCAGTGGTGCGTCCCCAGCTACAGAAAATCATATGGATTACGACGCATATCTTCAGCTTTCCAATTTGAGTAGTGGGGGGCTTACTCTAGCTGTGGTAGGGATCAGCCCACTCCCAAAGCTGTTCTACACTCCCAGCCCAGAAGGTGACAATGATCTTGTAGAAGCAATTCCCATCTTTTCCGAGGAGCACTGCTCCCCAGCTGTGGAGAACAACTCTGTGGTGACCATGAGAAAAGGCATCTCGTTCAGTCACGAGTGTCTTTTGCAGGTGGGTGTTGAGGGAGCTGCTGCAGATATGGGCGGCAACAAAGAAGTGGGCCTCAACTTCAGCAGCACGTCTGGTGTGGTCGGTCGGCTCTCCTCATCTACGCTGAGGGGCAAAATTCAAAGGTTGCCGTTGTACCTATCAAGATCTCAGGAAACAATCAACAACTCAACAAATACTTCCTTAGCGATCCACAGTCAGAATTTTCCTGATGACAGCTCTtgcacagcagcacagtcagAACCTTGCTCGAGCAGCCTACTGGTCACAGTCTCCGTGAACCAAACAGATGAAGTTGGGCCTTCTGTCGCTGCCTCTCCCAGTACAGATCTCATTGAGGCTAGAACAGGTTCCCAAAGGCCCTTCCACAAACTGAGAGAAGTGGAGGATCAGTCATCACAAACTATTTACAGTCAAGCAGAAGAGATACAGGCTGCTTTTCTAGCAGACTGTGAAACCGAGCAGCCAAAGCCATGCCCAGGGAGTATGGAGGCGGGCTGCAGTTCAGACATGGATTTTGAATGCCTGTCTCTGACAAATGAACCAAAGATGAAACTGGAGACATGTGGGTGCCAGACAGTTTATGCCAACTGCTTTAGTGGGACAGAAAGTAACTTCGATGAGGAGCTGACCGTCTTTGAGTTCTCATGTAGGACACAGGGTCCTCTGACGGTGCCTCCTTCAGCCCGGGGGTTCTACTCCTCTGAGCTCAGCCCTCTGCTGTCTCCATTGGATACTGACATAAGTTTTGACTGCTACCTAACACAAAACCTGGAGGACACAATGAACCAGCTGAGGAATAAGAAATATGAGACCCCACAAGGCTTCAGCTTGCTCCAGGAAGACATCTCGGAACTGCTGCAGGTCCTACAGAGAAACCCAGAGAGCCGGGGCCAGCACCACAAGGAGACCTGCGCTGTGCAGTTCTCCGAGAACAAACGCCTCCTCTACGCTGAGTCTCGGAAGTTGATGTCCAGCTGTCAGAGGGTCATCAGAGTTGGACAAACCCCGGAAGAAATGCTGCTGGCTCTCGCAGACAGCTTCCAGACTCTGGTCCAGCTAACAACTGTCTGTCTCTGGTTTACAAACTGTGTCCGCTGCCAGAAGAGACACACTGAGGTCCTCAGCAGCTTGCGAGAGATAGTGGGCACTTATAAGGAGTTTGCCCAAGCTGCTGAGAAGGCCTGCGGGAAAAAGAGCTGCCATGACCTGGCCATCAAGCTGCTGGCACGGCAGTGTACGGCCCTGACTGCTGGGGTCTTCTGTCTAACACAGCTCTTCCGAACCCTGACCTCTCTGTGA
>TU116811
CATAATTCAGGCCACCAGTGCATATATATCCAGTTTACCCTGTCCTTGTGtttatgactgtgtgtgtcctgtggCTCACAGTAAGGCAGGCTGTGTGTTTCACAGGGGCCAAAGTCCTCCTTTATCACAGCAGAGAAGCGTGCTCGGCTGAAGACCAACCCAGTGAAGGTGCGCTTTGCAGAGGAGGTGTTGGTCAACGGTCACACTCAGgGTAACTCGCTGCTCTTCCTTCCCAATGTCCTCAAGGTGTATCTGGAAAATGGCCAGACGAAAGCGTTCAAGTTTGAGGAGAAAACCACCGTAAAgGACATTATTCTGACCCTGAAGGAGAAGCTGTCGATCCGCTGCATTGAGCACTTTGCTCTGGTGCTGGAAGAACAGTACAACATTGCCCGGATCTACCTTCTGCATGCTGAG

Function

symbol description
frmpd1b Predicted to be located in cytoskeleton. Orthologous to human FRMPD1 (FERM and PDZ domain containing 1).
frmpd1 Involved in establishment of protein localization to membrane and regulation of G protein-coupled receptor signaling pathway. Located in plasma membrane. Part of protein-containing complex. Colocalizes with cell cortex.

GO: NA

KEGG:

id description
K23954 FRMPD1; FERM and PDZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017844 True 4446 mRNA 0.53 15 24997544 25018212
TU116811 False 417 lncRNA 0.50 3 25007684 25009604

Neighbor

gene id symbol gene type direction distance location
AMCG00017845 NA coding downstream 10772 24965474 ~ 24986772 (-)
AMCG00017837 ints10 coding downstream 54911 24928171 ~ 24942633 (-)
AMCG00017836 NA coding downstream 78718 24903782 ~ 24918826 (-)
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding downstream 158397 24799083 ~ 24839147 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding downstream 209203 24759381 ~ 24788341 (-)
AMCG00017846 NA coding upstream 57393 25075605 ~ 25080431 (-)
AMCG00017851 NA coding upstream 76986 25095198 ~ 25100631 (-)
AMCG00017850 NA coding upstream 82621 25100833 ~ 25105142 (-)
AMCG00017852 NA coding upstream 97726 25115938 ~ 25224281 (-)
AMCG00017855 NA coding upstream 328608 25346820 ~ 25366550 (-)
G93591 NA non-coding downstream 47296 24949968 ~ 24950248 (-)
G93576 NA non-coding downstream 70356 24922467 ~ 24927188 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding downstream 267322 24725938 ~ 24730222 (-)
G93500 NA non-coding downstream 317644 24677165 ~ 24679900 (-)
G93434 NA non-coding downstream 491934 24505382 ~ 24505610 (-)
G93639 NA non-coding upstream 88590 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 92678 25110890 ~ 25111090 (-)
G93660 NA non-coding upstream 354721 25372933 ~ 25381038 (-)
G93689 NA non-coding upstream 499074 25517286 ~ 25517600 (-)
G93718 NA non-coding upstream 791332 25809544 ~ 25809853 (-)
AMCG00017839 NA other downstream 48408 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 726949 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1675590 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4638919 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5578188 19412987 ~ 19419356 (-)
AMCG00017861 LOC103354863 other upstream 926929 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 994276 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1085814 26104026 ~ 26107805 (-)
G93796 NA other upstream 1090848 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 2820039 27838251 ~ 27839790 (-)

Expression


Co-expression Network