AMCG00017846


Basic Information

Item Value
gene id AMCG00017846
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25075605 ~ 25080431 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017846
ATGGCAGCCTCCAGTGTCTGGAAGTACTGTGAAGAAGAGCAAGCGGGAAAGAGCGCGTTAATAGTCCAGTTTTCCAAtggacaaattaaaaacacagaacaagtGGACTTCACTTTCTATAAAAACGCGGACACCAGCAATCCAAGAAAGAAGAACCGGCGTATTGTGGCTGCGGACACGGACCGGCTCTGCTACGTGGGCAACAATTATGGAGCAGGAtccttaaaatgtaacaatctTTGCAAGTATTATGTAGGCGTTCTGGACAAGAAGACAAACCGAATGGAGGTGCACAACGCTGAGCTGTTTAGCATGCAGCCAGTCCTCCCAGGTGAAACTTTAAAGGAAGAAGGTGCCTCAGAAATCCAGGATAAATCCTACAGGGAAAAGGTGGATTCTCTGATCGAGGCTTTTGGCACCAATAAGCAGAAGCGTGCCCTGAGCTCCCGGCGGCTGAACCAGGTGGGCAGCGAGACTCTGCACAAGGCTGTGGCCAAAGCGGCTGACAACATAATCGAAAAGAAGGGCCTGAAAGCCCTTGTACAGGATGTGgtgcagacagagacacaggctgAAAATGACCTCTACCTCCCACCTTGTAATCCGGGGGCAGAAACACCTGCCGATGTCTACGCATTTGACTCCCGTATCCTTTCTATTATTTCCCCGGCGCAGTACAAGGCCCTGGAGACGCCCGCCCAGACTCTGAAGGGACTCTCTGAGGAGGACATTCAGAAGATGACTCAGGAGGGGAGTTCCCTGGTTGTGCTCAAGGAGTTGCAGTGTCTGCCTAAGGACCCAGAGGCTCAGGACCACAAAGTCCGCTGCCTCTGGTATCTCAACTGGCTCTTCAAGCTGTCCTCCCAGAGAAGGATCGGCCCAAAGTatGGTTCGGAGGAGGGCATGCCACGGAACATTATGACTTCCTTCCTCAAGAACTTCACTGTTGAAACGTTCAATGATGGCCAGATTCGAAATATGGTTCCAGCTTCCATGAAGACTAAGATTGTTGCCTACGCCCTGGCCCTCCTGCTTCACATCAGAGACTTTGAGGTGGACCTGACTCTACTGCAACGAGACTTCAGACTCACCGAGAACAAGATGCTTGAAGTTGCTAAAGCCATGGGACTGAAGATCGGCAAAATATCTGTACTGGCTTCTGGGGGGCTGATGGAGGACCACAAATTGGGCACACTGGTTCTCCCGCTGATGAAGTATGACCAAAGGATGGAGAGGAGGAAACGCAAGAAGATGTCATAG

Function

GO: NA

KEGG:

id description
K03005 RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017846 True 1260 mRNA 0.51 12 25075605 25080431

Neighbor

gene id symbol gene type direction distance location
AMCG00017845 NA coding downstream 88833 24965474 ~ 24986772 (-)
AMCG00017837 ints10 coding downstream 132972 24928171 ~ 24942633 (-)
AMCG00017836 NA coding downstream 156779 24903782 ~ 24918826 (-)
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding downstream 236458 24799083 ~ 24839147 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding downstream 287264 24759381 ~ 24788341 (-)
AMCG00017851 NA coding upstream 14767 25095198 ~ 25100631 (-)
AMCG00017850 NA coding upstream 20402 25100833 ~ 25105142 (-)
AMCG00017852 NA coding upstream 35507 25115938 ~ 25224281 (-)
AMCG00017855 NA coding upstream 266389 25346820 ~ 25366550 (-)
AMCG00017862 dnah6 coding upstream 742545 25822976 ~ 25923225 (-)
G93591 NA non-coding downstream 125357 24949968 ~ 24950248 (-)
G93576 NA non-coding downstream 148417 24922467 ~ 24927188 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding downstream 345383 24725938 ~ 24730222 (-)
G93500 NA non-coding downstream 395705 24677165 ~ 24679900 (-)
G93434 NA non-coding downstream 569995 24505382 ~ 24505610 (-)
G93639 NA non-coding upstream 26371 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 30459 25110890 ~ 25111090 (-)
G93660 NA non-coding upstream 292502 25372933 ~ 25381038 (-)
G93689 NA non-coding upstream 436855 25517286 ~ 25517600 (-)
G93718 NA non-coding upstream 729113 25809544 ~ 25809853 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 57393 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 126469 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 805010 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1753651 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4716980 20302000 ~ 20358625 (-)
AMCG00017861 LOC103354863 other upstream 864710 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 932057 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1023595 26104026 ~ 26107805 (-)
G93796 NA other upstream 1028629 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 2757820 27838251 ~ 27839790 (-)

Expression


Co-expression Network