AMCG00017848 (zbtb5,LOC101168920,LOC101469222,LOC102302739)


Basic Information

Item Value
gene id AMCG00017848
gene name zbtb5,LOC101168920,LOC101469222,LOC102302739
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25082919 ~ 25093338 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017848
ATGGAAATTGATTTTGTGTTCTACACTGTAATTCGCAATAATGGTTTCACAGCGGTCATGGATTTTCCCGGGCACTTTGACCAGATATTCCAGCAACTGAACTACCAGCGTCTGCATGGGCAGCTGTGCGACTGTGTGATCGTGGTGGGCAGCCGTCACTTCAAGGCCCACCGCTCGGTGCTGGCGGCCTGCAGCACCCACTTCCGGGCGCTGTTCACTGTGGCAGAGGGCGACTCCAGCATGAACATGATCCAGCTGGACAGCGAGGTGGTGACGGCCGAGGCCTTCGCCGCCCTAGTCGACATGATGTACACCTCCACCCTCATGCTGGGGGAGAGCAACGTCATGGATGTCCTCCTGGCTGCTTCACACCTGCACCTGAATGCCGTGGTCAAAGCCTGCAAGCACTACCTGACAACGCGCACGCTGCCCATGTCCCCCCCCGGAGAGCGGGcccagcaggagcagcagcaggcgGCCAATTCGCGGCTCCAGCGCTCCttcctgctgcagcagctgggcCTGAGCCTGGTGAGCTCTGCACTGAATGGGGCTGAGGAGGGGAACCAGGTGCGAGGGCCCAGTGGCGTGGTGGAGCAGCGGGCCTCCTTTCCTATCCGTCGTTTCCACAAGAGGAAGCCCTCTGCCGCCCCTGAGGACCGGCCCAGGCAGCGGCTCAGACCCTCGGCAGCCCCCGAAGAGTCAATGATGATTGGCGATTCCGGGGGGCGTGATTTCTTCTCTCCGGATTCCCTCAAGCTGGGCAACGGGCCTAAGCCAGATACGGGGGTGGGCGGGGCAGTGGTGGATGACAGTGCCGGCATTCTGGAGCAGTCCTACGGCGGTCCGCAGGAGGACGCCCAGATGCCCAGCCAATCGGACAGCGGCCGGGGTGGCCCgggtcagcagcagcagcaaccagGACATGGTGCGGATGACTTCCAGGACCCCCAGCAGGAGCTGCCTGTGGAAGGCGAAAAGGCAAAaggtggggaggaggaggaacacATGCGCGTTGTGGTCAAGAGTGAGCCCCTGAGTTCCCCAGAGCCCCAGGATGAGACCAGTGACGTCACCTCTCAGGCAGAGGGTAGCGACCAAGTAGAGCCTGGAGCTGACAAGATCGAGCTGAGCCCGGAAAGCAGTGACCGCAGTTTCTCTGACCCTCAGTCCAGCACTGACCGGGTCGGGGACATGCACCTGCTGGAGGGCTCTGcagggggaggtggaggtggtgggggtggaCCAACAAGCAATGATAATCTGGACAGCAAGCAGGCGTTCAGTATCTCCAGCTTCCTCAGCAAGGGCTATGCAGGGACTGGGCAAGGCTCTGCTTCTGCCTGCGAAGACAACCTCCCAAACACGACCAGCGCCGAGTGCCGAATAGAGGGGGATGCCACCTACCTGCTGAGCCCAGAGTCTGTCAACGGGGGCTCCTCCTCTGGAAGCTCTCTGCTGCACCACCACCCTCCATCCCACCATCACCACCTCTCCGGGGACAGTAACCCTTTTGGGGACTCAGACGGCCACTTCCTGAGACCCATGCAGGAAGGCCTTGGCTACAGGGGTGCTGATCAGTTTGCACTGGACTTCCAGAGGTCTAGTCTGGGCCTGcactccctctctcgctccaATAGGGgcggtggaggaggtgggggagcGGGGGGGAACACCGCCACGTCCGCCAACCTCGGCTTCCCGGGTTACCGCCGCATCGCGCCCAAGATGCCGCCAGGGGTCGGGGGCTCTCTGCGTATGGATGGGACTCAGCTCCAGGATGCCTCTTCCTCTTCCACAGGGGGTCCTCACTTGCTCCTAAATGGGACAGGCGGGGGCTCTGGTTACGACGGAGGCCAGCACGGACCCACGGCAGCCCCTCCACAGCTCACCCGCGCTTCGGCGGACGTGCTCTCTAAAGGCAATGGCAATTGA

Function

symbol description
zbtb5 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
zinc finger and BTB domain-containing protein 5-like

GO: NA

KEGG:

id description
K10492 ZBTB5; zinc finger and BTB domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017848 True 1935 mRNA 0.63 3 25082919 25093338

Neighbor

gene id symbol gene type direction distance location
AMCG00017842 NA coding upstream 8970 25053194 ~ 25073949 (+)
AMCG00017841 NA coding upstream 109149 24972880 ~ 24973770 (+)
AMCG00017835 NA coding upstream 177142 24887263 ~ 24905777 (+)
AMCG00017830 LOC107598304 coding upstream 324264 24740960 ~ 24758655 (+)
AMCG00017831 rpl9,rl9,LOC107700291 coding upstream 352755 24726609 ~ 24730164 (+)
AMCG00017847 NA coding downstream 15553 25108891 ~ 25112677 (+)
AMCG00017849 pax5 coding downstream 156856 25250194 ~ 25262749 (+)
AMCG00017853 NA coding downstream 180615 25273953 ~ 25299127 (+)
AMCG00017854 LOC107746038 coding downstream 361106 25454444 ~ 25462515 (+)
AMCG00017857 LOC107656869,LOC107548317,LOC100696351,LOC108424164,LOC107709434 coding downstream 464547 25557885 ~ 25574707 (+)
G93588 NA non-coding upstream 133651 24947991 ~ 24949268 (+)
G93454 NA non-coding upstream 454501 24626559 ~ 24628418 (+)
G93354 NA non-coding upstream 1035151 24044178 ~ 24047768 (+)
G93241 NA non-coding upstream 1262396 23818331 ~ 23820523 (+)
G93238 NA non-coding upstream 1268498 23813846 ~ 23814421 (+)
G93651 NA non-coding downstream 216364 25309702 ~ 25312347 (+)
G93675 NA non-coding downstream 315179 25408517 ~ 25409609 (+)
G93688 NA non-coding downstream 423963 25517301 ~ 25517637 (+)
G93733 NA non-coding downstream 856398 25949736 ~ 25950372 (+)
G93734 NA non-coding downstream 857816 25951154 ~ 25951398 (+)
AMCG00017843 NA other upstream 30545 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 367189 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 970809 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 1753350 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 4232302 20848356 ~ 20850617 (+)
AMCG00017886 NA other downstream 1899553 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 2379543 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 3538554 28631892 ~ 28646750 (+)
G94275 NA other downstream 4340074 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 5726531 30819869 ~ 30831867 (+)

Expression


Co-expression Network