AMCG00017853


Basic Information

Item Value
gene id AMCG00017853
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25273953 ~ 25299127 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017853
CAATGCAAGAATCCCCCCTTCCCAATGGCCACTCGCACCCGGGCCGGGACTTCCTGAGGAAGCAGATGAGAGGAGACCTCTTCACCCAGCAGCAGTTAGAGGTATTGGACCGAGTGTTTGAAAGACAGCACTACCCTGACATCTTTACAGCCCCCGAGCCCATCAAGCCGGAGCAGACGACAGATTACTCGGCCATGGCGTCTTTAGCAGGAGGCCTGGATGAGATGAAGAACAGCCTCAGCAACCCCACCCCTGCAGACCTGGGGGCCAGCGTCCCGGGGCCACAGTCGAGATTTGGCAAGCACAACGCTCCCTGGATACCCCCCCCATGTCCCCCCTGCAGGACAGGGGAGTTACTCCACGCCAGCGCTGACAGGAATGGAAGTGACTTTTCTGGGAGCCCATACACCCACCCCCAATACTCGACATACAATGAATCATGGAGATTTCCTAACCCCAGTTTGTTAGTGTTCCAGCAGGACTATGGCTCGCGCCTTGGCACAGAAATCGGATGTACTTCTGGGTTTTTTCCCGGCCAGTCGGGCCAGATACAAGGTATGTTGAAGTGGCCCAATGGGAAACATACTAGCCCTGGGCCGCCGCTTCTCTTTGAGCCCTTTGTTGCT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017853 True 626 mRNA 0.57 5 25273953 25299127

Neighbor

gene id symbol gene type direction distance location
AMCG00017849 pax5 coding upstream 11204 25250194 ~ 25262749 (+)
AMCG00017847 NA coding upstream 161276 25108891 ~ 25112677 (+)
AMCG00017848 zbtb5,LOC101168920,LOC101469222,LOC102302739 coding upstream 180615 25082919 ~ 25093338 (+)
AMCG00017842 NA coding upstream 200004 25053194 ~ 25073949 (+)
AMCG00017841 NA coding upstream 300183 24972880 ~ 24973770 (+)
AMCG00017854 LOC107746038 coding downstream 155317 25454444 ~ 25462515 (+)
AMCG00017857 LOC107656869,LOC107548317,LOC100696351,LOC108424164,LOC107709434 coding downstream 258758 25557885 ~ 25574707 (+)
AMCG00017856 LOC107709456,LOC101470744,LOC102789888 coding downstream 314755 25613882 ~ 25625670 (+)
AMCG00017858 LOC102212431,LOC106592107,LOC103354528,LOC100699752 coding downstream 342688 25641815 ~ 25665195 (+)
AMCG00017859 LOC107084522,LOC107548356,LOC106961693,LOC103132339 coding downstream 460381 25759508 ~ 25777438 (+)
G93588 NA non-coding upstream 324685 24947991 ~ 24949268 (+)
G93454 NA non-coding upstream 645535 24626559 ~ 24628418 (+)
G93354 NA non-coding upstream 1226185 24044178 ~ 24047768 (+)
G93241 NA non-coding upstream 1453430 23818331 ~ 23820523 (+)
G93238 NA non-coding upstream 1459532 23813846 ~ 23814421 (+)
G93651 NA non-coding downstream 10575 25309702 ~ 25312347 (+)
G93675 NA non-coding downstream 109390 25408517 ~ 25409609 (+)
G93688 NA non-coding downstream 218174 25517301 ~ 25517637 (+)
G93733 NA non-coding downstream 650609 25949736 ~ 25950372 (+)
G93734 NA non-coding downstream 652027 25951154 ~ 25951398 (+)
AMCG00017843 NA other upstream 221579 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 558223 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 1161843 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 1944384 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 4423336 20848356 ~ 20850617 (+)
AMCG00017886 NA other downstream 1693764 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 2173754 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 3332765 28631892 ~ 28646750 (+)
G94275 NA other downstream 4134285 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 5520742 30819869 ~ 30831867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G932210 NA non-coding NC_048574.1 CM023228.2 86490343 ~ 86492125 (+)