AMCG00017854 (LOC107746038)


Basic Information

Item Value
gene id AMCG00017854
gene name LOC107746038
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25454444 ~ 25462515 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017854
ATGAATGCCTTGTGTGTTGAATGCTGTTCTTGGTTCGGCCTCTTCCCACAGAGTGAAGACAGCCCGAGCCCGAAGCGCCAGCGGCTCTCGCACTCGGTCTTCGATTTCGCCTCGCCTGCGCCCTCTCCGCCAATGCGGCCATGGGAGATGCCAACCAATCGGAGGCCCCCTTCGGCTCGACCCAGCCAGCACCACTTCTCAGGGGAAAGATGCCACACTCCCGCACGCAACAGGAGGAGCCCTCCTGTCAGGCGCCAGCGTGGGCGCAGGGACCGGCTGCCGAGGCACAGCACTGTGGGGCAGGATGAGAACTACCACCACCTCACCTACGGCCAGCCCCCCAGCCTGGAGGAGCCGCGGGCCTTCCACCCCCCCAACGTGTCCCCACGCATGCTGCACCCCGCCGCACACCCCCCCCAGCAGAGCGCAGTCATGGTGGATATTCACGAGCAGATTCACCAGGGCACTGTGCCAGTGTCTTACACAGTCACCACCGTGGCGCCACATGGGATCCCCCTGTGCACAGGCCAGCACATCCCCGCCTGCAACACCCAGCAGGTCCCTGGCTGCTCTGTGGTCTTCAGTGGTCAGCACTAccctgtgtgcagtgtgcccCCTCCGATGCTGCAGGCGTGCTCTGTGCAGCACTTGCCGGTCCCCTATGCATTCCCATCCCTGATCTCCAGCGACCCCTTCTTAATACACCCCCCACACCTCTCCCACCAccctccccacctccctcccCCCGGCCAGTTTGTCCCTTTCCAGACACAGCAGTCCCGTTCGCCGTTGCAGAGAATAGAGAATGAGGTGGAGCTTCTAGGAGACCATCTGTCTGTGGGGGGTGGTTTCAGCTACCCTCATTCAGCACATCCCACCACACtgcccccctccacccctctccAGTTCCTCTCTCACGACCCCCTGCATCAGGAGCTGTTTGGAGTACCTTATCCACATTTCATGCCTCGACGAATCACAGGTCGCAGATACCGTTCCCAGCAGCCATTGCCCCCTCCACCCTATCACCCTAGCTTCCTGCCATACTTCCTCTCAATGCTTCCAGTACAGCCAACAGTGGGACCAGCCATTAGTCTAGAGCTTGATGTGGATGATGGAGAAGTTGAAAATTATGAGGCTCTGCTAAACCTGGCAGAGCGTCTTGGAGAAGCCAAACCCAGGGGCTTAACAAAGGCTGATATCGAACAGCTTCCATCTTACAGATTCAACCCAAACAACCACCAATCAGAACAGACCTTGTGTGTAGTCTGTATGTGTGATTTTGAGTCCAGACAGCTACTTCGGGTCTTGCCTTGCAACCACGAATTCCATGCCAAGTGTGTTGACAAATGGCTGAAGGTAAGTTGCAGCACAGCAAGTTTTGCTAAGCAGTGTCAACAGACATACTGTACCTAA

Function

NR:

description
PREDICTED: RING finger protein 44-like

GO: NA

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017854 True 1416 mRNA 0.58 10 25454444 25462515

Neighbor

gene id symbol gene type direction distance location
AMCG00017853 NA coding upstream 155317 25273953 ~ 25299127 (+)
AMCG00017849 pax5 coding upstream 191695 25250194 ~ 25262749 (+)
AMCG00017847 NA coding upstream 341767 25108891 ~ 25112677 (+)
AMCG00017848 zbtb5,LOC101168920,LOC101469222,LOC102302739 coding upstream 361106 25082919 ~ 25093338 (+)
AMCG00017842 NA coding upstream 380495 25053194 ~ 25073949 (+)
AMCG00017857 LOC107656869,LOC107548317,LOC100696351,LOC108424164,LOC107709434 coding downstream 95370 25557885 ~ 25574707 (+)
AMCG00017856 LOC107709456,LOC101470744,LOC102789888 coding downstream 151367 25613882 ~ 25625670 (+)
AMCG00017858 LOC102212431,LOC106592107,LOC103354528,LOC100699752 coding downstream 179300 25641815 ~ 25665195 (+)
AMCG00017859 LOC107084522,LOC107548356,LOC106961693,LOC103132339 coding downstream 296993 25759508 ~ 25777438 (+)
AMCG00017860 LOC107656769 coding downstream 462146 25924661 ~ 25945888 (+)
G93675 NA non-coding upstream 44835 25408517 ~ 25409609 (+)
G93651 NA non-coding upstream 142097 25309702 ~ 25312347 (+)
G93588 NA non-coding upstream 505176 24947991 ~ 24949268 (+)
G93454 NA non-coding upstream 826026 24626559 ~ 24628418 (+)
G93354 NA non-coding upstream 1406676 24044178 ~ 24047768 (+)
G93688 NA non-coding downstream 54786 25517301 ~ 25517637 (+)
G93733 NA non-coding downstream 487221 25949736 ~ 25950372 (+)
G93734 NA non-coding downstream 488639 25951154 ~ 25951398 (+)
G93735 NA non-coding downstream 489553 25952068 ~ 25952377 (+)
G93736 NA non-coding downstream 490989 25953504 ~ 25953740 (+)
AMCG00017843 NA other upstream 402070 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 738714 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 1342334 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 2124875 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 4603827 20848356 ~ 20850617 (+)
AMCG00017886 NA other downstream 1530376 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 2010366 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 3169377 28631892 ~ 28646750 (+)
G94275 NA other downstream 3970897 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 5357354 30819869 ~ 30831867 (+)

Expression


Co-expression Network