AMCG00017861 (LOC103354863)


Basic Information

Item Value
gene id AMCG00017861
gene name LOC103354863
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25945141 ~ 25957648 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017861
AGGCACCGGAATGTGAAGAGGCTCTCATGGACAAATGTGGAATTTGCTTTGGAGACAACTCGGCCTGTGAAGTTGTCACTGGGACTTTCACGCGCTCCATTCTCTCAGTTGGATACCACAAAATTCTCGAAATTCCCAAAGGAGCgacagaaatcaaaataaaagagatGGTGAAGAGTACAAATTATCTGGCAATAAGAGACCAGCATGGCGAGGCCGTCATCAATGGGAACTGGGCCATCGACAGACCAGGGCAGTTTCTAGCAGCAGGGACAACATTCACCTACAAGAGACCCAATGAGATCCGCAGCAAAGCCGGAGAGTCCATTACAGCACAGGGACCCACGAATGAAGTGTTGCATATTTATGTCATATATCAACAGGCGAACCCCAGTGTGTATTATGAGTACATTTTACCCAGAGATAATATTTTCAGCATACAACCAGTACCTCATTCTGACATCCAACCACTGGGTGAGACACAAAGCAGTCAACTCGGACCCTACACTGTGAACGGACAGAGCTATTCTCTGAGTGATGCCAATGGAGACAACTTTGTAAATGGAGTCCACACCAATCAGGTCTCTGTAGAACAATTCACTCCCACCACCCTGCAGCCGTATGATTCTGCACTTTGGGACGACAGGAATGAGTCCCAGACGGCGTACAACTGGAAGTACGCTGGAATGACTCCATGCAGTGCCTCCTGTGGGGGAGGCACCCAGTTCCCTTTGTTCATCTGTGTGGAGAGATCGACTCACGAGCCTGTGTCCGAAAGCCTCTGTGATGAACATTCAAGGCCAACGCCTGAAGAGGAAGCTTGCAACACTCAGCCCTGCCCTGCCTTCTGGGACATTGGCGAATGGTCTGAATGCAGTAAAACTTGTGGTCCAGGGATCCAGCATCGGCAGGTGCTGTGCAGACAAGCTACCGTCAACCAAACGACCACCGTCCCGCCACATCACTGTCGCTACCTGGAGAAGCCAGCGACCACCACCACCTGCCAGCTGAAGATCTGCAGTGAGTGGCAAATCCGCACTGAGTGGACTTCGTGCTCTGTGCCCTGTGGGGTAGGACAGAGGACCAGGGACATCAAATGCGTTGACAATCTTGGAGACGTGGTGGAGGATGAAGAATGCAACATGAAGCTGAAACCAGGGGACTCCGAAAACTGTGACATGGGGGCGTGCAGCAAGAGCTGGTTCATCACAGAATGGAGTGACAGGTGCTCAGCCGAATGTGGAAGTGGCAGCCAGACCAGGGATGTGGTTTGTCTCATGAACCACATCAGCAGCCTGCCACTGGAAGGCTGTGGCAACGAGAAGCCAACAGAGACGAAAGCCTGTGACTTCGGCCCCTGCCACGAGAAAGTGGATTGGTATACTGGGCCCTGGGGACAGTGCTCTGCAGAGTGTGGCAATGGCACTAAGACCCGGAGTGTGGTGTGCCTCAGACAGTCCAACAGCAGCTTCATGGAAGCAGACCTCTGGGAATGTGGTCACCTCCAGCCACCTCCCGCGGCACAGGACTGCTTCCTGAAGAAGTGTGGGGCCAAGTGGTTTACTACTGAGTGGAGTGTGTGCTCCAAATCGTGCGAGGGGGGATACAGGGTCAGAGAAGTCCGCTGCCTAGCAGACGATAAGACGCAAAGCAGCAATTGTGACCCGTTCCTTATGCCAGAAGACCGAGAGGAATGCAACATCCATCAGTGCATTCCTGAGATTGATGCGAACTGTAAGGACATGTACTTCAACTGCAATGTCGTGGTGCAAGCAAGGCTCTGCGTTTACTCCTATTACAGAACCGCCTGCTGTGCCTCCTGCTCCAAAGTCAGTAGGAGGGAAGCTCACCTGAGAAGGAGATGACTTCAGTTGAACAAGCCTCCTCATTGCTTGCAACTTACAGACATCCATACTGGTTGAATGTCGAAAACCATTAAGGCACTGTATGTGCTTTGAGCCTCTTTACaacaagtaataaaaaaaaaacaagttggaGGTCCAGCGATTGATTTTTGCACAATTAAGGGGAATATATGGTACATATTATATTAAGTTCATTTATTGTTGAAAACCTTGAACTGTCCTGTATTTTCCTGCATTGAGAAACACATTCAGTATGCCCACTGGACCTTACATAACAGAAACACCAGTTTCAGGAGAGGTACCATTATAGGGAACATGCTGGGTAAACAGGACAACAGTATTGATTGATGATAAATAAATGGTGTTCATTATTCCAAACTAGGGGTTCAGTATACCCAATGGCAACCTCCTTACTTACATACTACCAGCTACTAAATTATCATAACTCATAAAGCACAGAGAAGTTACATTAGATGGGCGATTtaatgcatcttaaaataacacattgcaTTCTTGTGATATCTGAAAGGTTTTACAGGATAAACCATGATCTAGTACTGAATTTTAGTAtcttgcagtttttgtttttatttgcgtTTTAAACTATagtgaatgaaacaaaacaaaaccaatgtaTTTTCCCATTTCTATTTTGCTTCATTCATGATCATTGCATTGCAGGGCTGTGTATGACTTGTGTAGTGAGGCTGTTCGGTGTTGTGTGCAGAGGGAGATCTGACTGGAGTGACAGCACCACTAATTGGATTTTGGGAACTCAGCATTCAAATCTAGACAGCAGAGTTGTGAAGGGGTGGGAAGGCATGCCTCTTAGCACCAGCTAGGGCTACTCAAACATGCAACCCTTCAAAACCACTGCAATTTGCTCAACATTCTCAGTAGCAATACTGATCCCaccaatataatttataatggcTTTAGGAAAAGCTGTATAATAGTTCCTAGTTACCCATCCAGATTTCATTTAGGTGCCAAATTAGCAGATGATTCTAAAGGACAAACTGCGAACTCTGCAACAACATCAGAAGCTCTACAAAAAGATGCAGTTACTTTTCAAAtctaaatagaaaacaaatgcagtacaAATGTGTAGTAAAAGGGAAACGTCTACATGTTGTAGCAAGAATGTATAGAACGCACCGATCTGGAGAAATTACTCAAAAGATGGATGATGTGTTTGTGATACAGTCctcataaataaagtaaaagtatAGTTAAACCAATGGAGGTTCTGGTACAACCTAACACACAAGAGTTCATTTTTGAATAACCCCTGGAAGTCCTGAAATATATTTCTGGCCTAAAGGAGCTCTGGCTCTTCTTCTGGTCCTGGAATGTCCATTTGGCTGTTGGCTTGATTAGGCCACTTGGATCCATATAGTTTGTCAACCACTGATGCCCCTTGTGCTCCAACTGGGATTGGGATGCAGGAAAATGCTTAACAGTGGTCCTTATTATCCATTTCCTCTTCCTTCTCTTGGACTTTTTGGAGTTGTCAGTATCAAATGGTTCAAACTGATATGGCTGTATAATGCATGCCTCCACCTTGGATAATTACAACCATTTGAAGTGTAACAGCCATCCTGTTATGTCAATTTACCATAATATCAATTAGTACACATTCAGCAAAGGCGTgacaaacagaaatatgttCACAGTAAAGCAGCGATATATTGCATTTCCCTTctgttgtgtctttttttttttttttctccttcaggaAACTATAAAATCCTTACATtccattattttgctttgtgaagtcaataaaaaaatcctttaGCAATTCAGCATTTCTGGCGTCTACAGAGTCAAAGGgttaatgctttgaaatgtcaatattataagtattaatccacataaaacaaattgtgacaaataaaaaatccttttatgaaagctgtgtttacattttggtgTAAGATCATTTCAGAAGCCAAGAATAATCGCAGCAGAATGTGTGGCCTTGGCAGATGACCTTGGTAAACTGTTTGgcaatcatatatatatataaacaaacatttactttctgcatgcatgtatgtatatccATAGGCTTTTGTTcataaaatgcacaaaagacATGACACCCACACATTAATTTTCCAGAATATGTTTCTTTACTGATATAAATCAGACTTTTTAAGTGTTTAACTCTTTTTGAACTCACAGACTGAATGTAGAATAGAGCCCAAGATATCCCACTGTCCAGCTGAAATACAGTTTTCTGATTGTTCAGGTATATTATCACATTCAGAGAAACGCTACTCTATTATCTTACAACTAAAAATCACTGATTatgctatttttttgttttaatacattgccAAGGACATCATCCAAGTAACTTCAATGTAACTCCAAAATATAACTTtgtttatcaaattaaaatacagatttgtttttaagcatcGTACCaacaatcatttattaatactGTCAAAGTTTACAAAGccacataaataaaccaaaaatacaAGGTGAACCAATAGAAATGAATTTTGACACGAGCAACAATAAATTTACCCCTGAGATTACAAAAATATTCAATCCTGGTATGCAAGTTTACATCAGTTACTAgtatatactgatatatatatatatatacatatatacatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatacatatacaaTAAATATACAAGGCTGCTGTCAATCGTCAAGAGAACATCCAAGCATTCGAGGCAATACCTTTGGTTTAGGGTtagtataattttatatatatatatatatatatatatatatataaaattataactAACTAATATAGAgttagtataattatatatttatatgtattaacaATCATTGAGTACACTGAAAAGAGTACGAAGAAACAGCTAAAATAa
>TU116972
TAATTTTCCAGAATATGTTTCTTTACTGATATAAATCAGACTTTTTAAGTGTTTAACTCTTTTTGAACTCACAGACTGAATGTAGAATAGAGCCCAAGATATCCCACTGTCCAGCTGAAATACAGTTTTCTGATTGTTCAGGTATATTATCACATTCAGAGAAACGCTACTCTATTATCTTACAACTAAAAATCACTGATTatgctatttttttgttttaatacattgccAAGGACATCATCCAAGTAACTTCAATGTAACTCCAAAATATAACTTtgtttatcaaattaaaatacagatttgtttttaagcatcGTACCaacaatcatttattaatactGTCAAAGTTTACAAAGccacataaataaaccaaaaatacagtatataaaatacaaagggaaaaaaaaaaaactctcataAATGACAATTAACAGAGGTGAACCAATAGAAATGAATTTTGACACGAGCAACAATAAATTTACCCCTGAGATTACAAAAATATTCAATCCTGGTATGCAAGTTTACATCAGTTACTAgtatatactgatatatatatatatatatacatatacattgtgCTACAGATAGAAGGCACATGAGAGTCAGGCAGTGTTAACCTCGAGGCAAAACACTGCACCCTTGTAGTGTCAGCTGGaagttgaaagaaaaaaagcagacaaacaaaacaggaaaataacaaaggtcctaaaataagttttaatggcagtgtaaaagacACCAGAAGAGTTAAGGCCAATTACCAAGAAACCCATATAATTCAGTAAGTTCTGAACAACCACACAGGTTTACAGGTTTTCCCCATATGCTAGTCCACGGTGTACAATGTGAAGCCTATTATATTCAAATGAGGCTTGTCGAAGATTTTAtgcacaatataaatgtattgtagaTAAATATACAAGGCTGCTGTCAATCGTCAAGAGAACATCCAAGCATTCGAGGCAATACCTTTGGTTTAGGGTtagtataattttatatatatatatatatatatatatatatataaaattataactAACTAATATAGAgttagtataattatatatttatatgtattaacaATCATTGAGTACACTGAAAAGAGTACGAAGAAACAGCTAAAATAatggatggacagacagacctacactgacacacatataATGTACAAAGGCCATAATTTAATAACTTCAAATTTGACAAAGCTTTTTCTCttattctttaaatatgttcaagttttttttttttttttttttttttccctttctcttctctttccccCCCATGTACACATCTCAAGCACAAGAACAAGTACAAAACGAAACTCAGGAggggaagaaaattaaattaatgtcgATTTCAAGTTTGTCATTCCACGTGTGCAAGTCAACAATGCTACACTCGTAAGACGCGCCTCGTCAGTGCTGCTCTTGAAAGCTTAACAAGCTGCAGGACCCAGCTCTCTCTCTACATACCGTAACGTGTCAGAGACTTGGATCTCTCCAGTGGGCATCGCGGCAGGACAGGCCTCACTCGCTGTCGGTCTCCACGTCCGAGTCCGACCACTCGACCGGGGTCAGCATGCCTCTGCGCTGCGCGTACTCAATGACCGCCATGTAACAGAAATAATACTGGTCCCAGGTCTGGATACTGAAAGCACGTTGAGTCCGCATTCTCCTCACTGTCTGGTTCACATCCACCGTGCCAATGTCCTCTAATCTGGAGAGGCAAATATCCAGAGTGCAA
>TU116973
GGCGATTtaatgcatcttaaaataacacattgcaTTCTTGTGATATCTGAAAGGTTTTACAGGATAAACCATGATCTAGTACTGAATTTTAGTAtcttgcagtttttgtttttatttgcgtTTTAAACTATagtgaatgaaacaaaacaaaaccaatgtaTTTTCCCATTTCTATTTTGCTTCATTCATGATCATTGCATTGCAGGGCTGTGTATGACTTGTGTAGTGAGGCTGTTCGGTGTTGTGTGCAGAGGGAGATCTGACTGGAGTGACAGCACCACTAATTGGATTTTGGGAACTCAGCATTCAAATCTAGACAGCAGAGTTGTGAAGGGGTGGGAAGGCATGCCTCTTAGCACCAGCTAGGGCTACTCAAACATGCAACCCTTCAAAACCACTGCAATTTGCTCAACATTCTCAGTAGCAATACTGATCCCaccaatataatttataatggcTTTAGGAAAAGCTGTATAATAGTTCCTAGTTACCCATCCAGATTTCATTTAGGTGCCAAATTAGCAGATGATTCTAAAGGACAAACTGCGAACTCTGCAACAACATCAGAAGCTCTACAAAAAGATGCAGTTACTTTTCAAAtctaaatagaaaacaaatgcagtacaAATGTGTAGTAAAAGGGAAACGTCTACATGTTGTAGCAAGAATGTATAGAACGCACCGATCTGGAGAAATTACTCAAAAGATGGATGATGTGTTTGTGATACAGTCctcataaataaagtaaaagtatAGTTAAACCAATGGAGGTTCTGGTACAACCTAACACACAAGAGTTCATTTTTGAATAACCCCTGGAAGTCCTGAAATATATTTCTGGCCTAAAGGAGCTCTGGCTCTTCTTCTGGTCCTGGAATGTCCATTTGGCTGTTGGCTTGATTAGGCCACTTGGATCCATATAGTTTGTCAACCACTGATGCCCCTTGTGCTCCAACTGGGATTGGGATGCAGGAAAATGCTTAACAGTGGTCCTTATTATCCATTTCCTCTTCCTTCTCTTGGACTTTTTGGAGTTGTCAGTATCAAATGGTTCAAACTGATATGGCTGTATAATGCATGCCTCCACCTTGGATAATTACAACCATTTGAAGTGTAACAGCCATCCTGTTATGTCAATTTACCATAATATCAATTAGTACACATTCAGCAAAGGCGTgacaaacagaaatatgttCACAGTAAAGCAGCGATATATTGCATTTCCCTTctgttgtgtctttttttttttttttctccttcaggaAACTATAAAATCCTTACATtccattattttgctttgtgaagtcaataaaaaaatcctttaGCAATTCAGCATTTCTGGCGTCTACAGAGTCAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017861 True 4785 mRNA 0.41 13 25945760 25957648
TU116972 False 1746 lncRNA 0.36 2 25945141 25946954
TU116973 False 1360 lncRNA 0.38 1 25947235 25948594

Neighbor

gene id symbol gene type direction distance location
AMCG00017862 dnah6 coding downstream 21916 25822976 ~ 25923225 (-)
AMCG00017855 NA coding downstream 578591 25346820 ~ 25366550 (-)
AMCG00017852 NA coding downstream 720860 25115938 ~ 25224281 (-)
AMCG00017850 NA coding downstream 839999 25100833 ~ 25105142 (-)
AMCG00017851 NA coding downstream 844510 25095198 ~ 25100631 (-)
AMCG00017867 LOC107754176 coding upstream 75467 26033115 ~ 26049947 (-)
AMCG00017869 NA coding upstream 119080 26076728 ~ 26082767 (-)
AMCG00017870 NA coding upstream 138792 26096440 ~ 26097928 (-)
AMCG00017872 atp8a1,LOC107550857 coding upstream 154465 26112113 ~ 26193833 (-)
AMCG00017876 NA coding upstream 326317 26283965 ~ 26407993 (-)
G93718 NA non-coding downstream 135288 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 427541 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 564103 25372933 ~ 25381038 (-)
G93641 NA non-coding downstream 834051 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 838059 25106802 ~ 25107082 (-)
G93802 NA non-coding upstream 300448 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 395869 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 541266 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1805038 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1821389 27779037 ~ 27784050 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 926929 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 996005 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 1674546 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 2623187 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 5586516 20302000 ~ 20358625 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 54840 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 146378 26104026 ~ 26107805 (-)
G93796 NA other upstream 151412 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 1880603 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 2141257 28098905 ~ 28144589 (-)

Expression


Co-expression Network