AMCG00017866 (smim19,LOC107754471,LOC106604684,LOC106611785)


Basic Information

Item Value
gene id AMCG00017866
gene name smim19,LOC107754471,LOC106604684,LOC106611785
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26012488 ~ 26015942 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017866
ATACAACTAAAGACGATTGTTCTTTCTGTTTTATGATTGACTGGTAAGGGATATACACTGTAGAGGCCGCAGAAAACACACTTATGTCTGGTCTCAgccatttatacacacacacacacacacacacacacacttaaatacGGATCCCAAGGCGTCAGGTTCAACTACACAGGAGTGTGTTCCAGACACCCACAACTCTCAGTGTAGAGGTCCTGGCCTGTTTGCACCTGCACTTCATTGCACTTGTTACTTTCGTTGGTGCAATTGTGTCAGTGTTGGTTGTCAAGTAACTGTTTAGGGAATgttgttaatataatatttgcaATAATATCCTTTAACTTAACATTGCATAAACTCCATTGGAAAACAGGAATAGCATGTGCACCTCCCCTCCGCTGGATGGCGCTATATGGTCGCGGTGGGACTGAAATAAGATTGTTCCTCTTCCGGGGGCTTGCATCCTCTCAATGCAGTTTTTGTTTACATCGAGGGGTTGTGCATTTGGGAAGGGTTTGTGTCAGTACATCGCATCATCACATCGCCATGGCAGGGTATGGAGTGATGGCCGATGAAGGAACCATAGATTACTCCGTGCATGAAGCGTGGAATGAGGCCACCAACGTGTACCTGCTGGTCATTCTGGTCAGCTTTGGGCTCCTCATGTACGCCAGAAAAAACAAAAGGAAGATCATGAGGATTTTCGCACTTCCTCCAACAGTGGGATCTACACCAGAGCCTAACTTCTATGATGGCTTACAGAAAGTGCGCTTACGGCAACAGCTAGAGATGTACTCCCTTGGTAAGGAAGCAAGAAAATATgaccaacagcagcagcaagttCAACCCGATAGTGTACAACTTTCCATGGAGTGAATACCAgaagagacttttttttttgtactattaCAAATGTGAACTGTGGCATTCATTAATATGTgcaataaatcattttatttagcGTTTTGTTGAACTGAGGACTCAGGACTGTTTtagtaaaaatattatttaaacttgAAAATGTTTGATAATGTTATGCATTTCTTGTAATATATGTACAGTCAAGCTTAAAGGGTTACCTCATCATCAGGAAGCTGAAAAATGAAgatcaacattaaaataaaatgtgaatcaaAAATGGGCAATACTTGTCATACTTAAGAAGGCCCTCCTCAGTAAGGGATATCATCTGATTGCCTTTAACTACAGCACAGCCATCCTACAgccagtttacatttttgttgcatcctgctgttaaatacattattcaagtttttgttgacctgttttaatacatttttgtggatATTGCCTGcataaaaaacagcaaacagcCACCTGGAGTGCAGTCCATTTCCCTTTAGCTGATTCCTGATAGTTTGCATCAAAATAGAACTAACAGTGGACCTCTTTGCACATCTACAGACCTTAAACAGCACTCCTCAAGTTTCTGGAGGGCACCTCTGGTTGGTGCCAAGATCAAACCTCAAAGGTCTTGATAAATGGATGAAACGTTTGGAAAGATCTGGTTGGAAAGATTCCTTCTGTTCTCCGTGCTCGCTGTGAGTTGGTAGAATGATGTTATTTTtgtctataataataataataataataataaaaaaaaactcatccTTTGAACCTTAAGCTTTGAATCATGAAGTGTTACTTAATACGTGTAATCTGGAATTATGCAACAATGTAGGGCATGCACAACCGCACGGGCCAagttgaatttaaatttaaattttaccACATtatgaaattgattaaattactgttgtaaaacaaatgcagtcagAAAATTAATTGCAAGCACTATTTACAATGAGGTTCACACCCAGTTCCCTAATTCCTAACGCCCCACAGTGTGCAGAGGGTAACGCAGCTCTGATCTGGAACAAAGTCTTCTAGTTTTCCTTCCTCC
>TU116981
GGGCTTGCATCCTCTCAATGCAGTTTTTGTTTACATCGAGGGGTTGTGCATTTGGGAAGGGTTTGTGTCAGTACATCGCATCATCACATCGCCATGGCAGGGTATGGAGTGATGGCCGATGAAGGAACCATAGATTACTCCGTGCATGAAGCGTGGAATGAGGCCACCAACGTGTACCTGCTGGTCATTCTGGTCAGCTTTGGGCTCCTCATGTACGCCAGAAAAAACAAAAGGAAGATCATGAGGATTTTCGCACTTCCTCCAACAGTGGGATCTACACCAGAGCCTAACTTCTATGATGGCTTACAGAAAGTGCGCTTACGGCAACAGCTAGAGATGTACTCCCTTGCAAGAAAATATgaccaacagcagcagcaagttCAACCCGATAGTGTACAACTTTCCATGGAGTGAATACCAgaagagacttttttttttgtactattaCAAATGTGAACTGTGGCATTCATTAATATGTgcaataaatcattttatttagcGTTTTGTTGAACTGAGGACTCAGGACTGTTTtagtaaaaatattatttaaacttgAAAATGTTTGATAATGTTATGCATTTCTTGTAATATATGTACAGTCAAGCTTAAAGGGTTACCTCATCATCAGGAAGCTGAAAAATGAAgatcaacattaaaataaaatgtgaatcaaAAATGGGCAATACTTGTCATACTTAAGAAGGCCCTCCTCAGTAAGGGATATCATCTGATTGCCTTTAACTACAGCACAGCCATCCTACAgccagtttacatttttgttgcatcctgctgttaaatacattattcaagtttttgttgacctgttttaatacatttttgtggatATTGCCTGcataaaaaacagcaaacagcCACCTGGAGTGCAGTCCATTTCCCTTTAGCTGATTCCTGATAGTTTGCATCAAAATAGAACTAACAGTGGACCTCTTTGCACATCTACAGACCTTAAACAGCACTCCTCAAGTTTCTGGAGGGCACCTCTGGTTGGTGCCAAGATCAAACCTCAAAGGTCTTGATAAATGGATGAAACGTTTGGAAAGATCTGGTTGGAAAGATTCCTTCTGTTCTCCGTGCTCGCTGTGAGTTGGTAGAATGATGTTATTTTtgtctataataataataataataataataaaaaaaaactcatccTTTGAACCTTAAGCTTTGAATCATGAAGTGTTACTTAATACGTGTAATCTGGAATTATGCAACAATGTAGGGCATGCACAACCGCACGGGCCAagttgaatttaaatttaaattttacc
>TU116982
GGGCTTGCATCCTCTCAATGCAGTTTTTGTTTACATCGAGGGGTTGTGCATTTGGGAAGGGTTTGTGTCAGTACATCGCATCATCACATCGCCATGGCAGGGTATGGAGTGATGGCCGATGAAGGAACCATAGATTACTCCGTGCATGAAGCGTGGAATGAGGCCACCAACGTGTACCTGCTGGTCATTCTGGTCAGCTTTGGGCTCCTCATGTACGCCAGAAAAAACAAAAGGAAGATCATGAGGATTTTCGCACTTCCTCCAACAGTGGGATCTACACCAGAGCCTAACTTCTATGATGGCTTACAGAAAGTGCGCTTACGGCAACAGCTAGAGATGTACTCCCTTGGTAAGGAAGCAAGAAAATATgaccaacagcagcagcaagttCAACCCGATAGTGTACAACTTTCCATGGAGTGAATACCAgaagagacttttttttttgtactattaCAAATGTGAACTGTGGCATTCATTAATATGTgcaataaatcattttatttagcGTTTTGTTGAACTGAGGACTCAGGACTGTTTtagtaaaaatattatttaaacttgAAAATGTTTGATAATGTTATGCATTTCTTGTAATATATGTACAGTCAAGCTTAAAGGGTTACCTCATCATCAGGAAGCTGAAAAATGAAgatcaacattaaaataaaatgtgaatcaaAAATGGGCAATACTTGTCATACTTAAGAAGGCCCTCCTCAGTAAGGGATATCATCTGATTGCCTTTAACTACAGCACAGCCATCCTACAgccagtttacatttttgttgcatcctgctgttaaatacattattcaagtttttgttgacctgttttaatacatttttgtggatATTGCCTGcataaaaaacagcaaacagcCACCTGGAGTGCAGTCCATTTCCCTTTAGCTGATTCCTGATAGTTTGCATCAAAATAGAACTAACAGTGGACCTCTTTGCACATCTACAGACCTTAAACAGCACTCCTCAAGTTTCTGGAGGGCACCTCTGGTTGGTGCCAAGATCAAACCTCAAAGGTCTTGATAAATGGATGAAACGTTTGGAAAGATCTGGTTGGAAAGATTCCTTCTGTTCTCCGTGCTCGCTGTGAGTTGGTAGAATGATGTTATTTTtgtctataataataataataataataataaaaaaaaactcatccTTTGAACCTTAAGCTTTGAATCATGAAGTGTTACTTAATACGTGTAATCTGGAATTATGCAACAATGTAGGGCATGCACAACCGCACGGGCCAagttgaatttaaatttaaattttacc

Function

symbol description
smim19 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM19 (small integral membrane protein 19).

NR:

description
PREDICTED: small integral membrane protein 19

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017866 True 1921 mRNA 0.40 3 26012488 26015942
TU116981 False 1289 TUCP 0.39 3 26012661 26015492
TU116982 False 1298 TUCP 0.39 3 26012661 26015492

Neighbor

gene id symbol gene type direction distance location
AMCG00017862 dnah6 coding downstream 89263 25822976 ~ 25923225 (-)
AMCG00017855 NA coding downstream 645938 25346820 ~ 25366550 (-)
AMCG00017852 NA coding downstream 788207 25115938 ~ 25224281 (-)
AMCG00017850 NA coding downstream 907346 25100833 ~ 25105142 (-)
AMCG00017851 NA coding downstream 911857 25095198 ~ 25100631 (-)
AMCG00017867 LOC107754176 coding upstream 17173 26033115 ~ 26049947 (-)
AMCG00017869 NA coding upstream 60786 26076728 ~ 26082767 (-)
AMCG00017870 NA coding upstream 80498 26096440 ~ 26097928 (-)
AMCG00017872 atp8a1,LOC107550857 coding upstream 96171 26112113 ~ 26193833 (-)
AMCG00017876 NA coding upstream 268023 26283965 ~ 26407993 (-)
G93718 NA non-coding downstream 202635 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 494888 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 631450 25372933 ~ 25381038 (-)
G93641 NA non-coding downstream 901398 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 905406 25106802 ~ 25107082 (-)
G93802 NA non-coding upstream 242154 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 337575 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 482972 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1746744 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1763095 27779037 ~ 27784050 (-)
AMCG00017861 LOC103354863 other downstream 54840 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 994276 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 1063352 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 1741893 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 2690534 23318093 ~ 23321954 (-)
G93795 shisa3,LOC102786300 other upstream 88084 26104026 ~ 26107805 (-)
G93796 NA other upstream 93118 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 1822309 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 2082963 28098905 ~ 28144589 (-)
G94172 NA other upstream 2858219 28874161 ~ 28875923 (-)

Expression


Co-expression Network