AMCG00017867 (LOC107754176)


Basic Information

Item Value
gene id AMCG00017867
gene name LOC107754176
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26033115 ~ 26049947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017867
aaaatacgAAATATATCCGTAATATTCACAAGGTGATGCGAGACTAATACTAGGGGCACAATACGTGTGTAGGTCATGGCCAGCACTGTTTGCAGctggtgcagtgcagtgcagtgtagtgtgtgttgaAGTCCGGTGTGGTTGTGGACGGAGGCCTGGAGATCAGATTTTTTGAGCATATCAGTGAAAGTATAACGTATCCAAATATGGCTGCAGATTCGATGGAAATTGATGACTCTTTGTACAGTCGCCAGCGCTATGTCCTGGGAGACAATGCCATGCAGCAGATGGCCCAGTCTAACGTGTTCCTCAGTGGATTGGGAGGGCTTGGCGTGGAGATGGcaaaaaACATAGTTCTCGCTGGAGTAAAGGCATTGACTGTCCATGACACAAAGAAGTGCGAGACGTGGGATCTAGGTACCAATTTCTTTATCCGTGAAGAGGATGTCCTGAGCCACAGAAATAGagtGGAAACTGTGTATCCCCGTATTGCTGAATTAAATCCTTATGTTCAGGTCAACATGTCATCTGCTGCTCTGGATGAAACCACTgacttgtcatttttaaagaattatcAGtGTGTGATTCTAACAGAAGTGAGGATTCATCTGCAAAAGAAGATTAATGACTTTTGCCATTCACAGCAACCACCAATTAAGTTCATCAGCTGTGATGTGTATGGAATCTGTGCACGCATTTTCTGTGATTTTGGCAATGTGTTTGAAGTCTCTGACCCTAATGGAGAAGAACCTAAGGAAATCTTTGTGCAGAGCATAACACAGGACAATCCTGGTATAGTGACTTGTATGGACAACAGGACCCATGGCTTTCAAACTGGACAGTGTGTTGTCTTCCGGGAGGTTAATGGCATGTCAGAGTTAAATGGAACCACTCGCCAAATCACAGTGCTTTCGCcctatacattttcaataggAGACACATCTAGTTTGCAACCCTATGCCCATGGAGGAATAGTACTTCTGGTTAAAACCCCCAAGACATACTACTTTgAAAAAATGGAGAAGCAGCTTTTAGAACCAACTTGCCTTACTCCTGACTTCAGTAAACCTGACGCACCGTTGCAGATGCACGCAGCTTTGCTGGCCTTGGATTTATATCAGGAGCAGAACCAACGTTTGCCAGGCATTGGGAGTCTTCAAGATTCCGAAGTACTAATCAAGCTGACGAACGAAATTAACAAAACCTTAGTGAATAAAGCTGATGTCAATGAGGAGCTGGTGAAGTGGCTGTCCCGCTCGGCTCGGGGCTCCCTGCCCCCTCTGGCAGCTGCAGTGGGGGGGATAGCCAGCCAGGAGGCCCTGAAAGCGCTGACGGGGAAGTTTGCTCCTCTGCAGCAGTGGTTCTACCTGGATGCAATGGAAGTGCTGAAATCTCTTGACAGCTGTTCTACAGAGGAGTTCTTTCCAAAAGGAGATCGATATGATGCCTTGCGTGCTTGCATTGGAGAAACCATGTGCCAAAAACTACACAAAATGAGAACGTTTATGGTGGGCTGTGGTGCGATTGGCTGTGAAATGCTGAAGAACTTTGCTCTTCTTGGTGTTGGGTTAGCCAGCAACTCTGGAGAGATAACTATCACAGATCCAGATTTAATTGAAAAGTCTAATCTGAACAGGCAGTTTCTTTTTCGACCTCATCATATACAGAAGCCAAAAAGCTCAACGGCAGCGGCGGCAACATTAGAAATCAACCCACAGTTAAAAATCGATGCTCATCTCCACAAAGTATGCCCAGCCACTGAAAGCATGTACAGTGATGAGTTCTACACCAGACTGGATGTTGTTGTGACAGCACTGGATAATGTGGAGGCCAGAAGATACGTAGACAGcCGAAGCGTGTCAAACCAGAGAGCTCTCCTGGATTCAGGGACCATGGGAACAAAGGGACACACGGAAATCATTGTACCAAACCTGACCGAGTCTTACAACAGCCATcGAGATCCTCCAGAAGAAGAGGTACCATTCTGTACATTAAAGTCTTTCCCTGCAGTTATTGAGCACACGATACAGTGGGCCAGAGACAAGTTTGAAAGTGCATTTACACACAAGCCTTCAATCTACAACAAATTCTGGCAGACATACTCATCTGCAGAAGAGGTATTACAGAGAATGAAGGCCCAAGAAAGCATGGAGGGATCTTTTCAAGTCATCAAGTTACTCAGTCGAAGACCAACACAGTGGGCACATTGCATCACCCTTGCTAgattgaaatttgaaaaatacttcaaaagaAAGGCTATCCAGTTGCTGCATTCGTTTCCTCTGGATACAAAGCTGAAAGATGGCAGTCTGTTCTGGCAATCCCCTAAAAGACCACCTTCTCCAATTGAATTTGACTTGAAAGATTCTTTGCACTGCAGTTTTATTGTTAGTGCAGCAAAACTGTATGCAGCAGTATACAACATCCCTTACACAGAAAAGGATCTGTCACTAGAAGCCATCTCCCAGATCATTACAGATGTGAAGATTCCCGAATACAAGCCTGCGGAAAAGAAAATTGAAATCGACGAAAATGCCAAGAAGCCTGAGCAGACGAAGCTGGTAGTGAGCAGTGAAGAGGAGCGGGAAGCCATCGCCCAGCTGGAGGAAGCCATCTCTGCAAATGCAGTCACAAAAGCTCATCTCCAGATGAAGCTGGTCATGTTTGAGAAAGACAACGACAGCAACGGACACATAGACTTCATCACAGCCGCCTCCAACCTGAGAGCCAGGATGTACAACATTGAGGCCGCAAACCGACTGAAGACTAAGAGAATAGCGGGCAAGATCATCCCTGCCATCGCAACCGCCACCGCAGCTGTGAACTGTTTTTTCAATCTCGCTATCCCGATAATAGTGTTCACAGAACCCGCAGAGGTGAAACGGACACAGATCAGAGAACACATCTCCTTCTCCATTTGGGATCGATGGACGATTTATGGGAAAGAAGACTTCACCCTCTCAGACTTCATTAATGCTGTTAGGGAAAAGTATGGGATCGAGCCCACCATGGTGGTCCATGGTGTAAAAATGCTCTATGTCCCGGTAATGCCAGGACATAACAAGAGACTTAAACTCACAATGCAAAAGCTCATCAAGCCATCGTCGGAGAAGAGATACGTGGACTTGACTGTGTCTTTTGCTCCTGAATTGGATGGGGATGAGGACCTGCCAGGACCCCCGGTGAGATACTATTTCTGCCAGGAACACATCTGAGAGAACAGCTGACTGAGAAACCAAGGACCACTAACAATTTGGACTGCAGTGTAGCACTTGACTgtaaatacttttatattttattgcatagtTCTCTATGCCGATGCCTTAAGGTGTGTTTAACAGTTAACTTTATAAATGACCCAGTAAAAATGTACACATGGAGAccgttttcattgttttttttgttagccTTTCACATCCTTGGTATCTTGAACACGAGCTCGAGGATTAATGTAAGCACCAGCACACCAAagattcgtttttttgttttttttaaagcaaatgaaTGCTGAACTGTGAAGCGTAACCCTGATGCATTGTAGTACTGCAGGTTCAGAACCAGTCCAACAAGAGATCAGCCCGTTCACGCCTGCATTGGTTCCTTACAATAACTCATGAACACAAGGGAAGCAACCAGACGTGTTGATTTCGAtcgttttttatgtatttaaaaagagatCTGAAGTATTATTTATAGATGTTAATTGCcaatctttttctttatttatttttcttcgtGTTAAGTCGCTCTGTTTTATACTGGTGTCACGAACCATTGGAAAGACCGCAGTACTATAACTTCTTGTGCATTACAGGGTATTAGATTGTGCCAGTTacttttttatctttaaatctgtctttatttatctttatgaAACAAACCACAAACTGACTCTGAACACCTTTATGTGAATGTGTTCATCTCTGCAGTACATATAGCATTCTTGCCACATTGGTCTCTGTTGACTCTCACGGGCTTGTAACTTACATTTGTGTGCAGTATTGCCTGCAAGTTCCTTCTCACTGCGCCTGTACGGTACAATAAAGGCTCTGTAAAGCatcttgtatttgtatacacACAATATGTAAAACTGTGCAACATCTTACTGCAGCTTGGAACAATACAGACAAACACCATATCAGTAGGTCAAAGTGCAGTTATTATACTTTGATTTTGATTCAATAAACAGGTGGTAAATCTGTCAGAGTGCGATAACTTGAAACCAACATATCTATCATTTGTGTCCAATCAACAGCATTTATAAGTTACACTGAGGTTCCTTTTTATAGATTTTCCTTCCTCCCCCATTTCGAACAATCAACGACTGAAGTTTTGAAATGTGCATCATGTTTCtgaatgaaatgtaaaacacc

Function

NR:

description
PREDICTED: ubiquitin-like modifier-activating enzyme 6

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10699 UBE1L2, UBA6; ubiquitin-activating enzyme E1-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017867 True 4373 mRNA 0.44 33 26033115 26049947

Neighbor

gene id symbol gene type direction distance location
AMCG00017862 dnah6 coding downstream 109890 25822976 ~ 25923225 (-)
AMCG00017855 NA coding downstream 666565 25346820 ~ 25366550 (-)
AMCG00017852 NA coding downstream 808834 25115938 ~ 25224281 (-)
AMCG00017850 NA coding downstream 927973 25100833 ~ 25105142 (-)
AMCG00017851 NA coding downstream 932484 25095198 ~ 25100631 (-)
AMCG00017869 NA coding upstream 26781 26076728 ~ 26082767 (-)
AMCG00017870 NA coding upstream 46493 26096440 ~ 26097928 (-)
AMCG00017872 atp8a1,LOC107550857 coding upstream 62166 26112113 ~ 26193833 (-)
AMCG00017876 NA coding upstream 234018 26283965 ~ 26407993 (-)
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding upstream 387814 26437761 ~ 26439111 (-)
G93718 NA non-coding downstream 223262 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 515515 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 652077 25372933 ~ 25381038 (-)
G93641 NA non-coding downstream 922025 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 926033 25106802 ~ 25107082 (-)
G93802 NA non-coding upstream 208149 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 303570 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 448967 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1712739 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1729090 27779037 ~ 27784050 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 17173 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 75467 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1014903 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 1083979 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 1762520 24264679 ~ 24270595 (-)
G93795 shisa3,LOC102786300 other upstream 54079 26104026 ~ 26107805 (-)
G93796 NA other upstream 59113 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 1788304 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 2048958 28098905 ~ 28144589 (-)
G94172 NA other upstream 2824214 28874161 ~ 28875923 (-)

Expression


Co-expression Network