AMCG00017872 (atp8a1,LOC107550857)


Basic Information

Item Value
gene id AMCG00017872
gene name atp8a1,LOC107550857
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26112113 ~ 26193833 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017872
GAAGACAATTCCTTGTTGTGGTCTAACTGAATCCCACTCTTTGTTCTTGTGTATTTCTCAGCACCGCCAAGTACAATGTCCTCACATTCCTGCCGAGGTTCCTGTATTCCCAGTTCAGAAGGGCAGCAAActcatttttccttttcattgccCTCCTCCAGcaaaTCCCAGATGTTTCTCCAACGGGTCGCTATACCACTTTAGTTCCCTTGCTGTTCATccttgttgttgctgctgtgaaAGAATTCATAGAAGACCTGAAACGACACAAAGCCGATAATGTTGTGAACAAGAAGGAAACTCAAGtgcTAAGAAACGGTGCTTGGGAGATCGTCTACTGGGAGAAGGCTATGTGCTACATTGAAACCTCAAACTTGGATGGAGAAACCAATCTCAAGATCCGACAGGGCTTGCAGATTACATCAGAAATAAAAGATATTGATGCTTTAATGAGAGTTTCTGGCCGCATGGAATGTGAAAGTCCCAATCGCCATCTGTATGATTTTGTTGGCAATATAAGACTTGAAGGTCAAAGAGGTGCTCAGCTGAGGAATACCCAGTGGGTGCATGGGATTGTTGTGTACACAGGCCATGATACAAAACTGATGCAGAATTCAACACGACCTCCCCTGAAGCTGTCCAACGTGGAAAGAATAACAAACATTCAAATCCTGGTTTTGTTTGGCTGCCTGCTCGCCATATCCCTCATCTGCTCCATCGGCCAAACAATCTGGAAGGGAAAACATGGAAACGCGGCCTGGTACATGGACTTAAACTATGGTGGTGCCGCCAATTTTGGATTGAATTTTCTGACCTTCATCATTCTCTTCAATAACCTCATTCCCATCAGCTTGTTGGTTACCCTTGAGGTCATTAAATTTGTCCAGGCATACTTCATAAACTGGGACATGGACATGCATTACGAGGTGACGAACACCCCTGCTGTGGCGCGCACCTCCAATCTCAATGAAGAACTCGGCCAGgtgaaatacatcttttcagacaaaaCGGGAACCTTGACTTGCAATGTTATGCAATTTAAGAAGTGCACAGTCGCAGGAGTTGCCTATGGGCACAGTGCACAGTATGCGGATGAAGTGGGATTTAATGACCCAAGCTTACTGGAAAACCTCCAAAGCAATCATcttggacaagaagaaaaatatgaactTCTGAATGACACGGTCATTTATGATCGTCTTGCTGACAGCTCCAGGTATAAGGACATCACCTTAAAGCATTTGGAGCAGTTTGCTACAGAAGGGTTGAGGACGCTGTGCTACGCGGTCGCTGACATATCTGAGTCTTCGTACCAGGACTGGCTTCAGGTCTACCACCGCGCGTCCACAGCCATGCAGAACAGGAATCTGCAGCTGCTTGGAGCAACAGCCATCGAGGAtaaactccaggacaaagtCCCAGAAACCATTGAGACTCTGATGAAAGCTGACATCAAAATCTGGATTCTAACCGGAGACAAGCAGGAAACGGCTATAAACATAGGACACTCGTGCAAACTCTTGACAAAGAACATGGGCTTGATTGTCATCAATGAAGGGACATTGGATGGCACGAGGGAGACACTGAGTCGTCACTGCGGGATGCTTGGAGATGCTCTACGGAAGGAGAATGACTTTGCGCTCATCATTGATGGCAAGTCTCTGAAGTACGCCCTGACGTTTGGCATCAGGCAGTACTTCCTGGACCTCGCGCTCTCGTGCAAAGCTGTGATCTGCTGCAGAGTCTCTCCTCTGCAGAAGTCCGAAGTGGTCGAGATGGTGAAGAAGCAGGTGAAAGTGATAACCCTGGCCATTGGTGATGGAGCCAATGATGTGGGCATGATCCAGACAGCCCACGTGGGGGTTGGCATTAGTGGAAACGAGGGACTTCAGGCAGCCAATTCCTCAGACTACTCCATTGCTCAGTTCAAGTATTTGAAGAACCTCCTGCTCGTGCACGGCGCCTGGAACTATAATCGAGTGTCCAAGTGCATCCTGTACTGTTTCTACAAGAATATTGTTCTGTACATCATTGAGATCTGGTTTGCCTTTGTGAACGGCTTCTCTGGACAGATTCTTTTTGAGCGCTGGTGTATTGGTCTCTACAATGTGattttcaCTGCCCTGCCCCCTCTCACCCTGGGGATATTTGAGAGGTCTTGCCGCAAAGAAAATATGCTGAAGTACCCGGAACTGTACAAGACCTCTCAGAATGCAATGGGCTTCAACACCAAGGTTTTCTGGGCTCATTGTCTGAATGGCCTCTTCCACTCAGTTATTCTCTTCTGGTTTCCACTGAAAGCGTTCCAGCATGATACTGTgtttggaaatggaaaaactCCAGACTACCTGCTATTAGGGAACATGGTTTACACAtttgtggtGATCACAGTGTGTCTCAAAGCTGGACTCGAGACGTCATCCTGGACTATGTTCAGCCACATCGCAATCTGGGGGAGTATCGCCATGTGGGTGGTTTTCTTCGGGATCTACTCTTCTCTGTGGCCCGTCATTCCCCTGGCACCAGACATGTCGGGAGAGGCTGACATGATGTTTAGCTCCGGCGTGTTCTGGATGGGTCTTTTCTTCATCCCTGTGACGTCTCTGGTGTTTGATGTGGCATTGAAAGTAGTGAAAAGAAGTTGTTTTAAGACTCTAGTCGATGAAGTGCAAGAATTGGAGGCCAAGTCGCAGGATCCGGGAGCCGTGGTCCATGGGAAAAGCCTGACCGAGAGAGCCCAGCTCCTGAAGAACGTGTTTAAGAAGAGCACCGTGAGTCTGTACCGCTCGGAGTCCATGCAACAGAACTTGCTGCATGGTTACGCCTTCTCCCAGGACGAGAACGGCATCGTCTCCCAGTCGGAAGTGATCCGGGCCTACGACACGACTAAGCAGCGGTCCGAGGAGTGGTGAAGCAGCGTCCCCCGAGGGAGCAGGCCAAGGACCCCTTCACACAAACGCAGGGAGCTCTGTGTTTGAAAGCTGGCGGAAGTCACAGGGAGACTTTCTGAGCTTTAagatattttcttcttcaaaaaacaaatcatcatcataataaagtGTTCACTACTGTAGTTGTCTATGAAGCAGACATAAGCACCGTGCTTGCATTCTAACAAAGTCTGTATCTGAAGTTCACTCAGTATTCACTACGTCAGCAGGGCTTGAAAGTTGCATTCGTACGATTTGCCTGGTGTTGAGTATTTTTAAGACCCTGAAAGCAGGAGTGTGTCAGGCAGCTCTTTTATGATgtcttaaaaaaatctaaaatgcaattaatgtttgccaactgtatttttcttttaccgGGAGAAGGCACATATAAAATGAtcacaaatatgaaatactaGAGATGTATATGACAAATCCGACATGCCACACTGCTGGAACTTAAATTGCAATCCCAGAAAGTCTAGTTTGCCAAAGAAACATGATATTATCAGCGTTTTTAGGCTGTCGTTCTGAATGCAGTTTCAGCTCGAGACCGGGTCCGGGTCCTGTATTGAAGACCGCTTGCTTTTCTCACTCTGGATCGACACTCCATGAACTGGTTCAGACCCATTGCTTTCCAATCCCTTCTGTTAACAGCATTTAACTATGGCCTTACACGGGCGCGTCTCCTTGCCTTGGTCCATGATGACTTTTGGTGTTGATTCTTTAGATGGGTTGTCGATGTGCCTGCCTTCTGTAGTCGTCAATGCGGTTGCAAACTAGTGAACTTTTCAGATTTCTACCATTTGATACTGCTACCATTTTGCTCCTGTTCATCATTGATTGCGTTGTACATGTTTCTGAACTGCAATGTTCTTCACAACAGTGCCTAATCGAATTGAGATTCCCCTAATACGGTGTACTAAACACGTTCGTGCTAATGATAAGCTGGTAGTCGAGATTTAATTGTAACCCTCACTAAATTGCTCCTGTGCGTTTGACTCTAAGGCCCCAGTTGTTCACCACAGTGTTTCCTCCAGGCGCATTATATTCGCTGACAACGGCATGGCATGGTGGCGCTTCAAATAAGCTGTGATCTGATTCTGAAATGAACAAAGCTTATACCAAAATCGATGATTGAAATCCATTCATGCATaggcctctttttttttttttttttttttttaaacaagaa

Function

symbol description
atp8a1 Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and trans-Golgi network. Orthologous to human ATP8A1 (ATPase phospholipid transporting 8A1).

NR:

description
PREDICTED: phospholipid-transporting ATPase IA-like

GO: NA

KEGG:

id description
K14802 DRS2, ATP8A; phospholipid-transporting ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017872 True 4125 mRNA 0.46 30 26112113 26193833

Neighbor

gene id symbol gene type direction distance location
AMCG00017870 NA coding downstream 14185 26096440 ~ 26097928 (-)
AMCG00017869 NA coding downstream 29346 26076728 ~ 26082767 (-)
AMCG00017867 LOC107754176 coding downstream 62166 26033115 ~ 26049947 (-)
AMCG00017862 dnah6 coding downstream 188888 25822976 ~ 25923225 (-)
AMCG00017855 NA coding downstream 745563 25346820 ~ 25366550 (-)
AMCG00017876 NA coding upstream 90132 26283965 ~ 26407993 (-)
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding upstream 243928 26437761 ~ 26439111 (-)
AMCG00017874 NA coding upstream 250585 26444418 ~ 26452343 (-)
AMCG00017875 guf1 coding upstream 264385 26458218 ~ 26467868 (-)
AMCG00017878 si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522 coding upstream 448549 26642382 ~ 26650068 (-)
G93718 NA non-coding downstream 302260 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 594513 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 731075 25372933 ~ 25381038 (-)
G93641 NA non-coding downstream 1001023 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 1005031 25106802 ~ 25107082 (-)
G93802 NA non-coding upstream 64263 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 159684 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 305081 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1568853 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1585204 27779037 ~ 27784050 (-)
G93796 NA other downstream 2039 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 4308 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 96171 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 154465 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1093901 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 1644418 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1905072 28098905 ~ 28144589 (-)
G94172 NA other upstream 2680328 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 3075402 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 4391896 30585729 ~ 30596417 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007497 ATP8A1 coding NC_007125.7 CM002898.2 45028062 ~ 45179545 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_05877229_05888197 NA coding CI01000000 null 5877194 ~ 5888821 (-)