AMCG00017874


Basic Information

Item Value
gene id AMCG00017874
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26444418 ~ 26452343 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017874
AGAGCCCTGTAGCTGAACACTCTTCACTTGAactgaacaaaatacaatactgtgCCCCAACATTCCTATCAAGAATGGGTGACTTCCAACAGTTTGATCAAGACTTTTACCAATCAGGTTTTAACATTGACGAACAGGGACAAGATAACTACCGCTATGATGCCTCAAGCCAACAATTTCAACACGtCGATTGCGGTACTCCCACACCAAGAATATTTACTCCTCCTGGGGGGTTTATGCACTCTGAACAATCTTATACTGGCCAAGTATTACACCCCACAAGGCCAGTGGGTTCAGCGTACACGGGAACTGACACTTATGAAGAAGAACCTCCATTACTAGAAGAACTAGGTATAAACTTTGACCACATCTGGCAGAAGACATTAACAGTTTTGAACCCATTCAAGCCAGCAGATGGCAGCATCATGAATGAGACCGATCTCACTGGACCAATGGTTTTTTGCGTAGCACTTGGAGCGACTTTGTTACTGGTGGGTTTACTCTGACTTTTTGACGTGTACAGGCGGGTAAAGCTCACTTTGGGTACGTGTATGGCATCAGTGCCATGGGATGCCTGGGGATGTACGCACTGTTGAACTTGATGAGTGTGACTGAAGTCTCCTATGGCTGTGTGGCCAGTGTCCTGGGTTACTGCCTTCTTCCGATGGTCAGCCTGTCCAGTTTGGCTGTGTTCTTCTCATTGCAaggAATTCTTGGGATTATTTTGGCTCTTGTGATCATTGGTTGGTGCAGTTTGTCGGCTTCAAAAATATTCATCTCCACCCTGGCAATGAATGACCAACAGTTACTGATCGCTTATCCCTGTGCTTTACTCTATGGAGTCTTCGCTCTTCTGACTGTCTTCtgaactctctctctgtttgggGGGACAACATTAACAAAATGgtaacaacaaccaaaaaagaatcagatttcaaatgaaaatttTAACTTGTAAATTACTAACATATTTTATAGTATAGTGATTGTGTAATCAGAATTGAATCCACATAGATTTACAATGATATGgatatgaattaatgtattgtttttacattgcaAAAGATGATTGCATACTTGTAtagtataaattatatttttttcatatgctTTGCAAttagaatgtttttgttttttttcacctcggacctgttttgtaaaatgtaagaaatatgtGGAgcaataattataaattattaaaggGCAAAAGTAAGCTTTAACATGAATAACTTTGTTTAATACAGACATgtttgaaactaaaataaaaaaaatattcacacataatttaatgtaaagagaaatacttttaaaatatttgtatggctgatgaatattgcagcagagattATAACACCCAGAAATGCAGTCacttgaagaaaaaatacattcagattgTTTAATCGCTTATATGAAAGCTGCAGAGTCTTCAGTGAGGTTATCATAGCCCCTAATGGTCCACATTCATTCCCTGCCTATCTATATATGATTATAATCTGGAGCTGCTGCACACACAgcaaactaggaggtgataagTCTTGTTTAGTCAGACAATTGACTCTGCAGAATGTGATTTCAGCATGATAGCATTGCAGCCCAAAAAACGAGAATCTTGCAAATTTCATTAACGTTCCCAAATATGCATCGGAATATAATGACGGAGGAAAAAATCTAATTAGttgctaattacattttttattatttaacttaatGTTCTGCGGATCATTGTGCAGATAAGGCATAATGAGGCAGGAGAAATCATTTGCGGAGTCGCTGGCAGATAGTTATAGAAATGGGTTGTGACAACATGCATGTGGATGTCTTAAATGCTGTCTTTAAGGATTAGTTAGCATATCATCGCATACAAAATGATATTGACAGGATTTAAGGCATTCATGAATATTCCATTAAATGTTCAAGAACCCAGTTACTAAAGAAATCCATAATGAGATAACAGCAATTGAGTCCTTGGGCTATAATTCCTTTTGGGGTTGCACAGCGTAGGCAATGGTACTCTTTTGTGAAATAAGGTCATTAATGATTTCTAAGAACCTTTAAATGGGAAGCTTCAATATCTGATTTATGcttaggaaattaaaaaaaaagtaattgtatcCTGATTTTATGAATGCCATTGATGTGGTCTTATCGAGAGACCTAAAGCATCGTGCAATTTCAATGACATTACGTCTGGTAACATGGAATTTCATCAGTTACAAGCACGTTCCATCCCTATGATATTATAAGGAGTTTGTTTGTAAACCATTATtcaatttgcattgttttttaacatgttacatatttaatttaattacagacTTATTCTCTCGCTGTTTGTCTAATGCTCCTTGTATTCTTGAAAAAGgcaacaagagaaaaaaatattgtttcattatttaagtGGTTTATGAACTCAATAATTGGGCTTATTTATAGAACCCTctcatatacatataatataattgtatgtatttgtagaaaaaaaattattatcTGTGCTTATTGAGCCAAACACTATCTCACATTTCAATCTACAGACAATGGTTTACAGAGGACCTGATCAGAGAGTCACTATTATGCTAAATGATTCCTAAATCATAGtctaatcatttattttattttacattattaaactcTTGCTAAGTTTAAATGCAAGTAATCAggacagcagtgtcccccacctgggattgaacccacgcCCCCTCTGCTCCACCCTCCAGAGCCCTAACTGTTACTCCACAGTCATGTACTATATATCATGTGTTATATTCAATTGTAGTAGTCTACATCATATTCAATAAAGTGTTTTAGAGATACATAATCAGGAAACCCATTTGTTATGCATGTATTATGTCTAAACTGTTAACTTTATGATACTACTGGGATGCTCCTTACTATGGTTAACATACACAAATGAGGAGGACTTTCAAAATTATATACTCCTGACCATTAGAAGCATGTAGGACAACTGTTCATTGAGATTAGGAAATACGGCACTTTAAAGTGAGATTAAAATTGCTCATGCAACTTTATCATATGTTTCACACTGTCAATGCTGTTGGTGTtgatagatattacattaacattctattgaACTTTAATGATCAAATAGTTTAATCTTAATTGATTTTCAATTGAATCTCCTTTTGATATGAAATTGGGCCATATAATCTAAAGCATTTCCCAAATCCTCTATTTTCTAAGAAAACCTACTGGTGAGGTTTATTGCTACAGAGCTCCACAGATGCAAGCACAAATTGTCAATGCCATGTTTTGGAAGATACAGTGCTATTGTATCACTATTATGTATATGCTTACTCACTACCAATAGAGATATTAACTGAAAGATGCATGGGGTAACGTGCCAATGTCTTTCTGCAGAGGTAGCGTATTGGCAGGGTGCCAGTTTGCTAGAACTAAACACAGTCGGATAAgattaattgaatatattttgaagtgGTAAGCAGATTTAGAGTGCAGTTAATTGCAAGAGATTGGAATAAATGCCACTAGGTCTGTTCTGCATATCAAGAGGGATTAGTGACCTTCACTTGCAGGTAATTATTTAAGGATAAGGAGCAAGATGTGAACAGtaattttttgttaaatagtttaaaattgtaaaaaaaatgtgcttaaaaGTAACCTTTGGCCAACTTTTAGACTAGCATTAATATGCCATTGATGAATTGCCTCCCAAAGGTAAATGGGAAtagtacacttttaaaatgtaagaaaggTATGTAATGTAGAAAGATAATCATACATTGCTATATTTGGTCTAGTTTCTAGTTATCTGTTGAATACAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017874 True 3807 mRNA 0.35 6 26444418 26452343

Neighbor

gene id symbol gene type direction distance location
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding downstream 5307 26437761 ~ 26439111 (-)
AMCG00017876 NA coding downstream 36425 26283965 ~ 26407993 (-)
AMCG00017872 atp8a1,LOC107550857 coding downstream 250585 26112113 ~ 26193833 (-)
AMCG00017870 NA coding downstream 346490 26096440 ~ 26097928 (-)
AMCG00017869 NA coding downstream 361651 26076728 ~ 26082767 (-)
AMCG00017875 guf1 coding upstream 5875 26458218 ~ 26467868 (-)
AMCG00017878 si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522 coding upstream 190039 26642382 ~ 26650068 (-)
AMCG00017879 NA coding upstream 224914 26677257 ~ 26708132 (-)
AMCG00017880 zgc:110204,LOC107688011,LOC107710476,LOC107589116,LOC107716030 coding upstream 342458 26794801 ~ 26820001 (-)
AMCG00017885 NA coding upstream 470451 26922794 ~ 26930593 (-)
G93816 NA non-coding downstream 90694 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 186051 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 634565 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 926818 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 1063380 25372933 ~ 25381038 (-)
G93843 NA non-coding upstream 46571 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1310343 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1326694 27779037 ~ 27784050 (-)
G94060 NA non-coding upstream 1641125 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 1967573 28419916 ~ 28420262 (-)
G93796 NA other downstream 334344 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 336613 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 428476 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 486770 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1426206 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 1385908 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1646562 28098905 ~ 28144589 (-)
G94172 NA other upstream 2421818 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 2816892 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 4133386 30585729 ~ 30596417 (-)

Expression


Co-expression Network