AMCG00017877 (kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921)


Basic Information

Item Value
gene id AMCG00017877
gene name kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26437761 ~ 26439111 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017877
ATGGCTCTAAAAGAAAACATCCTGCCCATCAGCGAGATGTCGAGTCCTTTCCCTGAGGTGGTGGAGCTGAACGTGGGAGGACAGGTGTACGTAACCAAGCATTCTACTCTTGTCAGCATTCCTGATACCACTCTGCACAGCATGTTCATCAAGAACCAGGTGAAAGACCTACCCCGGGACAACAGGGGCCGCTTCTTCATAGACCGGGATGGATTCCTCTTCAGGTACATTTTGGATTTCTTGAGGGACAAACAGCTAGTGCTGCCAGACCACTTCCCTGAGAAGGAGAGGCTCTTGAGGGAGGCAGAGCATTTCCAGCTCAGCGACCTGCTGAAGTTGCTCACACCCAAAGTCACCAAGCAGAGCTCGATGAACGACGAGGGATGCCAGAGTGACATCGAAGAAAACTCCCAAAGTAGTGACCTGGCCAGGACTGCTGCCTTAGATAAGAGATCTGGATTTATTACCATTGGCTACCGGGGCTCTTACACCATGGTGAGAGACAATCAGGCAGACGCCAAATTTCGCAGAGTGGCCAGGATTATGGTGTGTGGCCGGATCGCCCTGGCTAAGGAAGTTTTTGGTGAAACTTTAAATGAGAGTAGAGACCCTGACCGACCGCCTGAGAAGTATACCTCCCGGTTTTACCTGAAATTTACCTACCTGGAGCAGGCTTTCGACAGGCTGTCTGAAGCTGGATTTCACATGGTTGCTTGTAATTCCACCGGGACTGCTGCCTTCATCAACCAGTACAGGGATGATAAAATCTGGAGCAGCTACAccgaatatatatttttcaCGACAGAGCGCATGTTCGCATAA

Function

symbol description
kctd8 Predicted to be involved in regulation of G protein-coupled receptor signaling pathway. Predicted to act upstream of or within ion transport and protein homooligomerization. Predicted to be part of receptor complex. Is expressed in dorsal habenular nucleus; habenula; and parapineal organ. Orthologous to human KCTD8 (potassium channel tetramerization domain containing 8).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD8-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017877 True 822 mRNA 0.50 2 26437761 26439111

Neighbor

gene id symbol gene type direction distance location
AMCG00017876 NA coding downstream 29768 26283965 ~ 26407993 (-)
AMCG00017872 atp8a1,LOC107550857 coding downstream 243928 26112113 ~ 26193833 (-)
AMCG00017870 NA coding downstream 339833 26096440 ~ 26097928 (-)
AMCG00017869 NA coding downstream 354994 26076728 ~ 26082767 (-)
AMCG00017867 LOC107754176 coding downstream 387814 26033115 ~ 26049947 (-)
AMCG00017874 NA coding upstream 5307 26444418 ~ 26452343 (-)
AMCG00017875 guf1 coding upstream 19107 26458218 ~ 26467868 (-)
AMCG00017878 si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522 coding upstream 203271 26642382 ~ 26650068 (-)
AMCG00017879 NA coding upstream 238146 26677257 ~ 26708132 (-)
AMCG00017880 zgc:110204,LOC107688011,LOC107710476,LOC107589116,LOC107716030 coding upstream 355690 26794801 ~ 26820001 (-)
G93816 NA non-coding downstream 84037 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 179394 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 627908 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 920161 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 1056723 25372933 ~ 25381038 (-)
G93843 NA non-coding upstream 59803 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1323575 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1339926 27779037 ~ 27784050 (-)
G94060 NA non-coding upstream 1654357 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 1980805 28419916 ~ 28420262 (-)
G93796 NA other downstream 327687 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 329956 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 421819 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 480113 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1419549 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 1399140 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1659794 28098905 ~ 28144589 (-)
G94172 NA other upstream 2435050 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 2830124 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 4146618 30585729 ~ 30596417 (-)

Expression


Co-expression Network