AMCG00017881


Basic Information

Item Value
gene id AMCG00017881
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26939374 ~ 26967252 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017881
GCGCACAGTGTCCGAGATCACGGTTTGGCAGGGGTGTTGTGGGAGTATGAGTGAGCTCGGATGAGGTGCCCTCGGTCTGCGTCAATGAAGCGCTTTATTTGGCAGCACCGTGTGTGGAGATCAGCGGTTCCGAAACAAGCAGAGACTCCGCTGAGCCGGCCGCTGGTAACGTCCCCGCAGGCGCTTATGGACCCCAGCTGACGCCGTGTGATTGCGTTCCTGAGAGCAGCCTGCTGGACGGGTGAGTGGCGCCATGGAGGAGCACATACAACGGGTCCGGACCCGCTGGCAGCGCCTGGTTTCCGGTGAGTCGAGCCACCATTTAGATGGTCCTCCGGCTCCCTCCAAGACCCCTTCATTCAGCTGTTCCCCGAAGAGTGCAAGAAAGCACAGGACGGTCATCCCCCACCTGAACCGCTTCAAGGAAGAGTACGAAAGTGTTGCAAAGTTGTACATGGACAACAGCATACGCACAACTAAGTACACTCTGCTCAGCTTCATCCCTATGAACCTGTTTGAGCAGTTTCACCgAGCTGCCAATCTCTACTTTCTCTTCATTGTTGTCCTGAACTGGGTGCCTGTGGTCGAAGCCTTTCAAAAGGAAATTACAATGATTCCCTTACTTGTTGTCCTGATTGTAATTGCCTTTAAAGACGCCCTGGAAGACTACAGGAGATACACATTCGATAAGAGgataaacaacaacataacCAAAGTGTATAGCAGGAAACATCAGAAATACACTGACCAAAGCTGGAAGGATGTCCGTGTTGGAGACTTCATTCGTCTCTCGTGTAATGAGATCATTCCTGCAGATATGGTACTTCTGTACTCTTCTGACAATGACAGGATCTGTCACATAGAGACCAGCAACTTGGATGGGGAAACGAACCTAAAGCAGCGGCAGGTTGTTCGAGGGATCTCGGAGCAGTATGCCAGTAAAGATCGTGTGAGTTTGAGTAAGGAGAATCTTCTTCTAAGAAGTTGTGTAATTCGAAATACAGAGGCTGTCATTGGTATCGTTGTTTATGCAGgGCATGAGACCAAAGCTATGAAAAACAACAGTGGACCTCGGTACAAACGCAGCAAATTGGAGAGGAGGCTGAATATCGATGTCTTCTGGAGTGTCGTTCTGCTGTTCCTCATGTGCCTGACTACAGCTATAGGTCATGGGATCTGGCTGAATGGTTTTAAGGATCCCCCGTTTATGATTCCAGATGGGATAACCCCTGTTCTGGGTGGATTCTACATGTTTTGGACGATGATAATTGTCTTAcaggtgcTGATTCCAGTTTCTCTCTACGTGTCCATTGAGATTGTCAAGCTTGGGCAGGTCTATTTCCTTCAGAATGACGTTGATTTCTACAATGAAAAGCTAGACTCAAACATCCAATGTCGCGCGCTGAACATAACGGAGGATCTGGGCCAGATCCAGTACATTTTCTCGGACAAAACGGGAACTCTGACCGAGAATAAAATGGTGTTCCGTCGGTGCAGCATTGCTGGTGTGGAATATCCCCACGAGGACAATGCGAGAAGACTGGAGTTATATAAGGACCTGGACTCTGAAGATGAGGAAAACCACACTATGACTGTAAAATCCAAGTCCAGCTCGAAGACCCAGAGTTGCAAGTCTTTAAGCTGCAACCGGAGCTCTGCGTCTCTCCAGACTCTCAATTCGAGCAGCTCGGACGTCTCTGAGGACGAGCAGGAGGAGGTGCACAGTCCTCGCCACGTCGCCTTCAGCAGTCGGATGGAGCGTGATGTGGTGCCTGACCCTAAGCTCCTGCAGAAGTTCAACCAGATCTCTTCTCCCTCGGTCATGCTGGAGGGAGCTCCTGGAGATGGATCCCTGGAAATGACCTACATTGTGGACTTCTTTCTCGCTCTTGCCATTTGTAACACTGTTGTGGCCCAGATGCCTGATGTTCCCCGAACCCCCCTGAAGTCCCTGGAGGAGATCAAGCAGCTGTTTCAGAGGTTCTCTGTTCCTCGCTTTAgctctttttccccctctaGTGCCAAAGGGTCTCTCTCAGATAGTCCTGCCGGTTTCACCGGCAGGCTCCGGTACTTCAATAAAATGAAGCCTTCGTCACCAAGTGCTGTCACCGAAGATGAGCAGGAGGCTGTGGAACTGAATCGGAAAGACTCGCCCAACCACAGCCAGACACCGAGTGACTTTGCAGACCAGCCACGGGTTGAGAGAGCTGCTGGCAGCCTTCTCTCCGAGCCTCTGTCTGGGCAGCTCAGTGTCGATGAACTGAATTACGAGGCGGAGAGCCCCGATGAAGCAGCCTTGGTTCACGCTGCACGAGCCTTCAGGTGCACTTTACGGTCAAGGACTTCTGACCAGCTCACTGTGGAGCTGCCTGCTGTTGGAAACTTGGACTTTCAGCTCCTGCACATCCTGCCTTTCGATTCGGTCAGGAAAAGGATGTCCGTAGTGATCCGACACCCGCTCACCAATGAAGTCGTCGTCTTTACAAAAGGGGCTGATTCAGTTATCATGGATCTACTTGCCAGCTCCTCTAAAGATAACATTCAGTTCGAAAAGATGCTGAGTGAAATGAAAGAACGAACACAGAAACATTTAGATGCCTACGCGAGAGAAGGCCTTCGCACTTTATGTATTGCTAAAAAGGTTTTTAGTGAAGCGGAATATGAAGACTGGTTGAAGAATCATCTTCTGGCAGAGACGAGTGCCACTGGGATCGTGGATCGACTACAGGAGGATGTCCCAGAGACCATTGAAGCTTTACAGAAAGCAGGGATAAACATCTGGGTCCTAACTGGGGATAAACAAGAGACTGCTGTCAATATCGCCTGTTCTTGCAGACTGCTGAGGCCTGACGATCACGTTTTAACTGCAAATTGTGACAGTAAGGAGGCATGTGAACCCTTGATGTCTGGTCTCCTTAAAACAGTCCTTGACCGAAaggaagagggaggaaaagCAGCCGTCAGTTTCACTCTGGTGATTGACGGCAGGACTCTGGAGTTTGCTCTGCACGAGGGCTTGGAGGAGTTGTTTCTGGATCTCACCAAGCACTGCCGGGCTGTGGTCTGCTGCCGGTCCACCCCGCTGCAGAAAAGCCAAGTGGTCAAACTTATCCGTGACAAACTTAAAGTCATGACGTTGGCCGTAGGTGATGGTGCTAACGATGTCAGCATGATCCAAGTTGCAGATGTTGGAATAGGAATTTCTGGTCAGGAAGGCATGCAGGCTGTGATGTCAAGCGACTTTGCCATTTCCAGATTTAAACACTTAAGCAAGCTGTTGCTAGTCCATGGACACTGGTGTTACACTCGATTAGCAAACATGATTCTATATTTCTTCTATAAAAACGTTGCCTATGTGAACCTCCTGTTCTGGTATCAGTTCTACTGTGGCTTCTCGGGCAGCACAATGACTGATTACTGGATCCTGATTTTCTTCAACCTGCTCTTCACTTCGGCCCCTCCGATCATCTATGGCGTCCTAGACAAGGATGTCTCTGCAGAGACTCTCCAACAGATACCCGGGCTCTACAAAAGTGGCCAAAACTCAGAGGCTTACCTGCCCTCTACATTTTGGTTTACCATGTTCGACGCATTGTATCAGAGCCTCGTCTGCTTCTTTGTTCCATACTTTGCATACGCTGATTCCGACATCAGCGTCTTCTCTTTCGGGACACCAATTAACACATCTGCCCTGTTTATTATTCTGCTGCACCTCGTTATAGAGAGCAAAACATTGacctggatacacattattgtgttggtTGGGAGTACGTTGTTTTACTTCGCGTTTACACTAATCTTCAGTGCCACTTGTGTTACCTGCAACTCGCCAGCCAGCCCCCTGTGGATCATGACGAAACACATGTCAGATCCCATCTTCTACCTCGTCTGTGTCCTGACTACAGTCCTGGCTCTGCTCCCCAGGTTCCTGTATCGCAGTATTCAGAACACTGTTTTCCCAGCAGCGACCATAAAGGCGGCCAAACTTGATAAGCTCAGCCCAGAGGAACGCAGCCGCAAAATGGAGTCCAGAGAAACGCAAAGAGTCAAAGACTTGCTCCTCCCTGTGAACGCCCTGAACGCGAATGCGACAGAAGGAAGACCGACCGTCAAAGAGAGTAGTGTGCTGACGTGACGAGGGAAGGCAATTCAACTCTGACCACGATGCACTGGGTGGGATGAAAATGTGAGTCTGAAATTCAACAGCCTCAAATGTGGAAATGCACCAAAGAGTAAGTAGGTTGGAGGAATTCATCCTAGAACACTATCTATGCACAAAATAGCAACTCGAGCATCATCTGAAACGTCTCGAGTCGTGCTGTCTGTAAAATCAGCACCATTAATCACAGAGCCACTGAAACAAAACGTTGATCCACCTGCTAAtggaaaactgcaaatctgTACTCCACGGCGCTCTATTTTTTGTGAGATGCTCCTTTccacaaaatacagtacagttttgtCGTTTGCTCTTAGTGGGGGGCCACACTGTGTCAAATTTTTCCATGAAGAATCCCACGCCCCCTTATTTAAACCGCTCTGCATATTTGTCTGCTTCAGGCACTGCAAGTACAATCTAACAGGTTCTGGTGTGTTTGTATTGGCCCTGTtgtgtttagtatttttattgcTGAGATGCCCAGAATGACAGGGCTCTGTATGCTTCTTATGAAAGGGGATTCAACAGGTcagtaatgtttgtttgttgttatgttttgctttactgtacttttttttttttttttttttttttttacacattat

Function

GO: NA

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017881 True 4767 mRNA 0.49 22 26939374 26967252

Neighbor

gene id symbol gene type direction distance location
AMCG00017882 gabrb1,LOC103364303 coding upstream 48543 26871001 ~ 26890831 (+)
AMCG00017883 NA coding upstream 109204 26829576 ~ 26830170 (+)
AMCG00017873 gnpda2,LOC106521223 coding upstream 481744 26453244 ~ 26457630 (+)
AMCG00017871 grxcr1,LOC107601454,LOC106600617 coding upstream 688728 26236014 ~ 26250646 (+)
AMCG00017868 NA coding upstream 829885 26105497 ~ 26109489 (+)
AMCG00017888 NA coding downstream 33310 27000562 ~ 27001794 (+)
AMCG00017889 pitx2 coding downstream 301983 27269235 ~ 27278351 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding downstream 384436 27351688 ~ 27360732 (+)
AMCG00017892 NA coding downstream 444108 27411360 ~ 27415163 (+)
AMCG00017897 NA coding downstream 777661 27744913 ~ 27768328 (+)
G93878 NA non-coding upstream 22893 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 440204 26498712 ~ 26499170 (+)
G93736 NA non-coding upstream 985634 25953504 ~ 25953740 (+)
G93735 NA non-coding upstream 986997 25952068 ~ 25952377 (+)
G93734 NA non-coding upstream 987976 25951154 ~ 25951398 (+)
G93891 NA non-coding downstream 16717 26983969 ~ 26988035 (+)
G93938 NA non-coding downstream 317470 27284722 ~ 27285066 (+)
G93986 NA non-coding downstream 731472 27698724 ~ 27700728 (+)
G94039 NA non-coding downstream 873801 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 1130481 28097733 ~ 28099214 (+)
AMCG00017843 NA other upstream 1887000 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 2223644 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 2827264 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 3609805 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 6088757 20848356 ~ 20850617 (+)
AMCG00017886 NA other downstream 25639 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 505629 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 1664640 28631892 ~ 28646750 (+)
G94275 NA other downstream 2466160 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3852617 30819869 ~ 30831867 (+)

Expression


Co-expression Network